% This file was created with JabRef 2.7.2.
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@STRING{lncs = {Lecture Notes in Computer Science}}

@STRING{mibi = {Medizinische Informatik und Bioinformatik}}

@INCOLLECTION{AhkPorSch08,
  author = {Ahkami, A.H. and Porfirova, S. and Scholz, U. and Hause, B. and Druege,
	U. and Franken, P. and Reinhardt, D. and Hajirezaei, M.R.},
  title = {{Development of Petunia specific microarrays to discover target genes
	crucial for adventitious root formation}},
  booktitle = {{Institutstag IPK Gatersleben, 29th to 30th September 2008, Gatersleben,
	Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{AhkSchSte09,
  author = {Ahkami, A.H. and Scholz, U. and Steuernagel, B. and Druege, U. and
	Franken, P. and von Wir{\'e}n, N. and Hajirezaei, M.R.},
  title = {{Identification of specific genes crucial for adventitious root formation
	in leafy cuttings of Petunia using microarrays}},
  booktitle = {{Institutstag IPK Gatersleben, 12th to 14th October 2009, Gatersleben,
	Germany}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.23}
}

@INCOLLECTION{AltAnSte10,
  author = {Alter, P. and An, J.-S. and Steuernagel, B. and Schmutzer, T. and
	Scholz, U. and Dresselhaus, T. and Gahrtz, M.},
  title = {{Maize Stem Parenchyma -- Developing Tools for the Engineering of
	a Potential Storage Tissue}},
  booktitle = {{Maize Genetics Conference, March 18--21, 2010, Riva del Garda, Italy}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.31}
}

@INCOLLECTION{AltAnSte09,
  author = {Alter, P. and An, J.-S. and Steuernagel, B. and Schmutzer, T. and
	Scholz, U. and Dresselhaus, T. and Gahrtz, M.},
  title = {{Maize Stem Parenchyma -- Developing Tools for the Engineering of
	a Potential Storage Tissue}},
  booktitle = {{Gesellschaft f{\"u}r Pflanzenbiotechnologie e.V., Workshops 2009
	der Arbeitskreise ``Somatische Embryogenese'' und ``Gentechnik'',
	1.-3. Oktober 2009, Universit{\"a}t Rostock}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.23}
}

@INCOLLECTION{AriSchPou11a,
  author = {Ariyadasa, R. and Schulte, D. and Poursarebani, N. and Zhou, R. and
	Mayer, K. and Waugh, R. and Platzer, M. and Steuernagel, B. and Scholz,
	U. and Langridge, P. and Close, T. and Graner, A. and Stein, N.},
  title = {A physical map of the barley genome},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.10.06}
}

@INCOLLECTION{AriSchPou11,
  author = {R. Ariyadasa and D. Schulte and N. Poursarebani and R. Zhou and B.
	Steuernagel and H. Liu and P. E. Hedley and H. Gundlach and T. Nussbaumer
	and P. Langridge and K. Mayer and U. Scholz and A. Graner and N.
	Stein},
  title = {{Whole genome physical map of barley (Hordeum vulgare L.)}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@INCOLLECTION{AriSchPou10,
  author = {Ariyadasa, R. and Schulte, D. and Poursarebani, N. and Zhou, R. and
	Steuernagel, B. and Scholz, U. and Martis, M. and Seidel, M. and
	Gundlach, H. and Mayer, K. and Taudien, S. and Felder, M. and Platzer,
	M. and Shi, B. and Langridge, P. and Close, T. and Morgante, M. and
	Hedley, P. and Waugh, R. and Graner, A. and Stein, N.},
  title = {The physical map of the barley genome},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@MASTERSTHESIS{Bac11,
  author = {Anja Bachmann},
  title = {{Anfrageranking in Suchmaschinen der Lebenswissenschaften unter Ber{\"u}cksichtigung
	der Bewertung von Querverweisen}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2011},
  type = {Bachelorarbeit},
  owner = {weise},
  timestamp = {2011.03.30}
}

@INPROCEEDINGS{BacSchLan11,
 author = {Bachmann, Anja and Schult, Rene and Lange, Matthias and Spiliopoulou, Myra},
 title = {Extracting cross references from life science databases for search result ranking},
 booktitle = {Proceedings of the 20th ACM international conference on Information and knowledge management},
 series = {CIKM '11},
 year = {2011},
 isbn = {978-1-4503-0717-8},
 location = {Glasgow, Scotland, UK},
 pages = {1253--1258},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/2063576.2063758},
 doi = {http://doi.acm.org/10.1145/2063576.2063758},
 acmid = {2063758},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {life science, outgoing cross references, ranking, search engines}
}

@INCOLLECTION{BacFunGro06,
  author = {Bachmann, H. and Funke, T. and Grosse, I. and Kuenne, C. and Langer,
	E. and Stephanik, A. and Thiel, T. and Weise, S. and Scholz, U.},
  title = {{ The Plant Bioinformatics Portal}},
  booktitle = {{Institutstag, IPK Gatersleben, 10.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.21}
}

@INCOLLECTION{BacFunKue07,
  author = {Bachmann, H. and Funke, T. and Kuenne, C. and Langer, E. and Mohr,
	M. and Stephanik, A. and Thiel, T. and Scholz, U. and Weise, S. and
	Grosse, I.},
  title = {{ The Plant Bioinformatics Portal}},
  booktitle = {{Evaluierung der deutschen Bioinformatikzentren, Berlin, 01. - 02.03.2007}},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INCOLLECTION{BacGroKue07,
  author = {Bachmann, H. and Grosse, I. and Kuenne, C. and Langer, E. and Stephanik,
	A. and Scholz, U. and Weise, S.},
  title = {{ Architecture of the Plant Data Warehouse}},
  booktitle = {{Evaluierung der deutschen Bioinformatikzentren, Berlin, 01. - 02.03.2007}},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INPROCEEDINGS{BalLanSch04,
  author = {Balko, S. and Lange, M. and Schnee, R. and Scholz, U.},
  title = {{ BioDataServer: An Applied Molecular Biological Data Integration
	Service}},
  booktitle = {{ Data Integration in the Life Sciences; First International Workshop,
	DILS 2004 Leipzig, Germany}},
  year = {2004},
  editor = {Rahm, E.},
  volume = {2994},
  series = {Lecture Notes in Bioinformatics},
  pages = {{140--155}},
  publisher = {{Berlin et al: Springer}}
}

@MASTERSTHESIS{Bar09,
  author = {Bargsten, J.},
  title = {{Nutzerprofilgest{\"u}tztes Sch{\"a}tzen von Rankingparametern f{\"u}r
	Suchmaschinen-Anfragen an integrierte biologische Datenbanken}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik},
  year = {2009},
  type = {Diplomarbeit},
  owner = {weise},
  timestamp = {2009.01.29}
}

@INCOLLECTION{BauHasMay08,
  author = {Bauer, E. and Haseneyer, G. and Mayer, K.F.X. and Pietsch, C. and
	Sch{\"o}n, C.-C. and Scholz, U. and Stein, N.},
  title = {{Rye-Express}},
  booktitle = {7th Plant Genomics European Meeting (Plant GEM), 24th to 27th September
	2008, Albena, Bulgaria},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.17}
}

@INCOLLECTION{BauHasSch10,
  author = {Bauer, E. and Haseneyer, G. and Schmutzer, T. and Seidel, M. and
	Zhou, R. and Sch{\"o}n, C.C. and Scholz, U. and Mayer, K.F.X. and
	Stein, N.},
  title = {{New genomics resources for rye (Secale cereale L.)}},
  booktitle = {{10th Gatersleben Research Conference, 22nd to 24th November 2010,
	Quedlinburg/Gatersleben, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.02.03}
}

@ARTICLE{BreSchHaj10,
  author = {Breuillin, Florence and Schramm, Jonathan and Hajirezaei, Mohammad
	and Ahkami, Amir and Favre, Patrick and Druege, Uwe and Hause, Bettina
	and Bucher, Marcel and Kretzschmar, Tobias and Bossolini, Eligio
	and Kuhlemeier, Cris and Martinoia, Enrico and Franken, Philipp and
	Scholz, Uwe and Reinhardt, Didier},
  title = {{Phosphate systemically inhibits development of arbuscular mycorrhiza
	in Petunia hybrida and represses genes involved in mycorrhizal functioning}},
  journal = {The Plant Journal},
  year = {2010},
  volume = {64},
  pages = {1002--1017},
  number = {6},
  doi = {10.1111/j.1365-313X.2010.04385.x},
  owner = {weise},
  timestamp = {2011.01.13},
  url = {http://dx.doi.org/10.1111/j.1365-313X.2010.04385.x}
}

@ARTICLE{CocWhiZul10,
  author = {Cockram, James and White, Jon and Zuluaga, Diana L. and Smith, David
	and Comadran, Jordi and Macaulay, Malcolm and Luo, Zewei and Kearsey,
	Mike J. and Werner, Peter and Harrap, David and Tapsell, Chris and
	Liu, Hui and Hedley, Peter E. and Stein, Nils and Schulte, Daniela
	and Steuernagel, Burkhard and Marshall, David F. and Thomas, William
	T. B. and Ramsay, Luke and Mackay, Ian and Balding, David J. and
	The AGOUEB Consortium and Waugh, Robbie and O'Sullivan, Donal M.},
  title = {Genome-wide association mapping to candidate polymorphism resolution
	in the unsequenced barley genome},
  journal = {Proceedings of the National Academy of Sciences},
  year = {2010},
  volume = {107},
  pages = {21611--21616},
  number = {50},
  doi = {10.1073/pnas.1010179107},
  owner = {weise},
  timestamp = {2011.01.13},
  url = {http://www.pnas.org/content/107/50/21611.abstract}
}

@MASTERSTHESIS{Col09,
  author = {Colmsee, C.},
  title = {{Reengineering des SBML-Exporters f{\"u}r das metabolische Netzwerk\-informationssystem
	MetaCrop}},
  school = {Hochschule Harz (FH), Wernigerode, Fachbereich Automatisierung und
	Informatik},
  year = {2009},
  type = {Diplomarbeit},
  owner = {weise},
  timestamp = {2009.04.01}
}

@ARTICLE{ColFleKla11,
  author = {Colmsee, Christian and Flemming, Steffen and Klapperst{\"u}ck, Matthias
	and Lange, Matthias and Scholz, Uwe},
  title = {A case study for efficient management of high throughput primary
	lab data},
  journal = {BMC Research Notes},
  year = {2011},
  volume = {4},
  pages = {e413},
  number = {1},
  issn = {1756-0500},
  url = {http://www.biomedcentral.com/content/4/1/413}
}

@ARTICLE{ColKelZan11,
  author = {Christian Colmsee and E. R. Joachim Keller and Christine Zanke and
	Angelika Senula and Thomas Funke and Markus Oppermann and Stephan
	Weise and Uwe Scholz},
  title = {{The Garlic and Shallot Core Collection image database of IPK presenting
	two vegetatively maintained crops in the Federal ex situ Genebank
	for Agricultural and Horticultural Crops at Gatersleben, Germany}},
  journal = {Genetic Resources and Crop Evolution},
  year = {2011},
  note = {doi:10.1007/s10722-011-9768-4},
  doi = {10.1007/s10722-011-9768-4},
  owner = {weise},
  timestamp = {2011.08.29}
}

@INCOLLECTION{ColKlaLan10,
  author = {Colmsee, C. and Klapperst{\"u}ck, M. and Lange, M. and Flemming,
	S. and Scholz, U.},
  title = {{Efficient Management of High Throughput Primary Lab Data}},
  booktitle = {{6th International Symposium on Integrative Bioinformatics, 22nd
	to 24th March 2010, Cambridge, United Kingdom}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.31}
}

@INCOLLECTION{ColSonSch10,
  author = {Colmsee, C. and Sonnewald, S. and Schl{\"u}ter, U. and Br{\"a}utigam,
	A. and Zellerhoff, N. and Weber, A. and Bucher, M. and Sonnewald,
	U. and Scholz, U.},
  title = {{OPTIMAS-OC: Development of an Oligo Chip to Explore the Maize Transcriptome}},
  booktitle = {{GABI-Statusseminar, 9th to 11th March 2010, Potsdam, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INCOLLECTION{CzeBoeSte10,
  author = {Czernicka, M. and Boeer, E. and Steuernagel, B. and Flemming, S.
	and Stein, N. and Scholz, U. and Kunze, G.},
  title = {{The Arxula adeninivorans Genome: Sequencing, Assembly and Annotation}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@INCOLLECTION{DehFunGra06,
  author = {Dehmer, K. and Funke, T. and Graner, A. and Keller, J. and Kn{\"u}pffer,
	H. and Kuenne, C. and Rajicic, T. and Scholz, U. and Stephanik, A.
	and Thiel, T. and Weise, S. and Willner, E. and Grosse, I.},
  title = {{ Databases and Applications for Plant Genetic Resources}},
  booktitle = {{Institutstag, IPK Gatersleben, 10.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.21}
}

@ARTICLE{EicBieSch06,
  author = {Eichmann, R. and Biemelt, S. and Sch{\"a}fer, P. and Scholz, U. and
	Jansen, C. and Felk, A. and Sch{\"a}fer, W. and Langen, G. and Sonnewald,
	U. and Kogel, K.-H. and H{\"u}ckelhoven, R.},
  title = {{Macroarray expression analysis of barley susceptibility and nonhost
	resistance to Blumeria graminis}},
  journal = {Journal of Plant Physiology},
  year = {2006},
  volume = {163},
  pages = {657--670},
  owner = {scholz}
}

@MASTERSTHESIS{Fle03,
  author = {Flemming, S.},
  title = {{Entwicklung einer webbasierten Datenbankanwendung zur Vorverarbeitung
	und Verwaltung von Daten aus pflanzengenetischen Experimenten}},
  school = {Fachhochschule Harz, Wernigerode, Fachbereich Automatisierung und
	Informatik },
  year = {2003},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Scholz}}
}

@ARTICLE{FreHofLan03,
  author = {Freier, A. and Hofest{\"a}dt, R. and Lange, M.},
  title = {{ IIUDB: An Object-Oriented System for Modelling, Integration and
	Analysis of Gene Controlled Metabolic Networks}},
  journal = {{In Silico Biology}},
  year = {2003},
  volume = {3},
  number = {0019},
  optnote = {{\em Online Journal}: {\tt http://www.bioinfo.de/isb/2003/03/0019/}},
  publisher = {{Bioinformation Systems e.~V.}}
}

@INPROCEEDINGS{FreHofLan02b,
  author = {Freier, A. and Hofest{\"a}dt, R. and Lange, M. and Scholz, U.},
  title = {{ Information Fusion and Metabolic Network Control}},
  booktitle = {{Gene Regulation and Metabolism~-~Post-Genomic Computational Approaches}},
  year = {2002},
  editor = {Collado-Vides, J. and Hofest{\"a}dt, R.},
  pages = {49--84},
  publisher = {Cambridge, MA: MIT Press}
}

@INPROCEEDINGS{FreHofLan02a,
  author = {Freier, A. and Hofest{\"a}dt, R. and Lange, M. and Scholz, U.},
  title = {{ IIUDB: An Object-Oriented System for Modelling, Integration and
	Analysis of Gene Controlled Metabolic Networks}},
  booktitle = {{Proceedings of the Third International Conference on Bioinformatics
	of Genome Regulation and Structure (BGRS'02) Novosibirsk, Russia
	July 14~-~20}},
  year = {2002},
  volume = {2},
  pages = {{123--125}},
  publisher = {ICG Novosibirsk},
  opteditor = {{XXX}}
}

@ARTICLE{FreHofLan02,
  author = {Freier, A. and Hofest{\"a}dt, R. and Lange, M. and Scholz, U. and
	Stephanik, A.},
  title = {{ BioDataServer: A SQL-based service for the online integration of
	life science data}},
  journal = {{In Silico Biology}},
  year = {2002},
  volume = {2},
  number = {0005},
  optnote = {{\em Online Journal}: {\tt http://www.bioinfo.de/isb/2002/02/0005/}},
  publisher = {{Bioinformation Systems e.~V.}}
}

@INPROCEEDINGS{FreLanHof04,
  author = {Freier, A. and Lange, M. and Hofest{\"a}dt, R.},
  title = {{ Integrative Analysis of Gene Networks Using Dynamic Process Pattern
	Modelling}},
  booktitle = {{Bioinformatics of Genome Regulation and Structure}},
  year = {2004},
  editor = {Kolchanov, N. A. and Hofest{\"a}dt R.},
  pages = {257--264},
  publisher = {Boston, Dordrecht, London: Kluwer Academic Publishers}
}

@MASTERSTHESIS{Fri11,
  author = {Friedrich, Christian},
  title = {{Entwurf und Implementierung einer JAVA-API zum Zugriff und zur DBMS-unabh{\"a}ngigen
	Persistierung von Bild- und Metadaten aus einer Pflanzenph{\"a}notypisierungsanlage}},
  school = {Hochschule Harz (FH), Wernigerode, Fachbereich Automatisierung und
	Informatik},
  year = {2011},
  type = {Diplomarbeit}
}

@INCOLLECTION{FunGroKue05,
  author = {Funke, T. and Grosse, I. and K{\"u}nne, C. and Lange , M. and Miehe,
	H. and Scholz, U. and Thiel, T.},
  title = {{ Crop plant EST information system CR-EST}},
  booktitle = {{8th Gatersleben Research Conference: Genetic Diversity \& Genome
	Dynamics in Plants, Gatersleben/Meisdorf, 03.~-~06.06.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INPROCEEDINGS{FunWeiKnu06,
  author = {Funke, T. and Weise, S. and Kn{\"u}pffer, H. and Grosse, I.},
  title = {{Ein neues Gesicht fur die Europ{\"a}ische Gerstendatenbank (EBDB)}},
  booktitle = {Ausgew{\"a}hlte Vortr{\"a}ge aus GPZ-Arbeitsgemeinschaften},
  year = {2006},
  volume = {70},
  series = {Vortr{\"a}ge f{\"u}r Pflanzenz{\"u}chtung},
  pages = {79--80},
  address = {G{\"o}ttingen},
  month = {M{\"a}rz},
  publisher = {Gesellschaft f{\"u}r Pflanzenz{\"u}chtung e.\,V.\
	
	 (GPZ)},
  language = {german}
}

@MASTERSTHESIS{Ger04,
  author = {Germer, S.},
  title = {{Konzeption und Implementierung von Webservices zur Integration von
	Methoden aus der Bioinformatik}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2004},
  type = {Studienarbeit},
  optnote = {{Betreuer: Sigmund, Lange, Scholz}}
}

@INCOLLECTION{GraGroJun07a,
  author = {Grafahrend-Belau, E. and Grosse, I. and Junker, B.H. and Klukas,
	C. and Kosch{\"u}tzki, D. and Scholz, U. and Schreiber, F. and Weise,
	S.},
  title = {{ Meta-All: a system for managing metabolic pathway information}},
  booktitle = {{Evaluierung der deutschen Bioinformatikzentren, Berlin, 01. - 02.03.2007}},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INCOLLECTION{GraGroJun07b,
  author = {Grafahrend-Belau, E. and Grosse, I. and Junker, B.H. and Klukas,
	C. and Kosch{\"u}tzki, D. and Scholz, U. and Schreiber, F. and Weise,
	S.},
  title = {{ Meta-All: a system for managing metabolic pathway information}},
  booktitle = {{GABI-Statusseminar, Potsdam, 06. - 08.03.2007}},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INPROCEEDINGS{GraJunKos08,
  author = {Grafahrend-Belau, E. and Junker, B.H. and Kosch{\"u}tzki, D. and
	Klukas, C. and Weise, S. and Scholz, U. and Schreiber, F.},
  title = {TOWARDS SYSTEMS BIOLOGY OF DEVELOPING BARLEY GRAINS: A FRAMEWORK
	FOR MODELING METABOLISM},
  booktitle = {Proceedings of the Fifth International Workshop on Computational
	Systems Biology, WCSB 2008, June 11--13 2008, Leipzig, Germany},
  year = {2008},
  editor = {Ahdesm{\"a}ki, M. and Strimmer, K. and Radde, N. and Rahnenf{\"u}hrer,
	J. and Klemm, K. and L{\"a}hdesm{\"a}ki, H. and Yli-Harja, O.},
  pages = {41--44},
  isbn = {978-952-15-1988-8},
  language = {english}
}

@INCOLLECTION{GraJunKos08a,
  author = {Grafahrend-Belau, E. and Junker, B.H. and Kosch{\"u}tzki, D. and
	Klukas, C. and Weise, S. and Scholz, U. and Schreiber, F.},
  title = {Towards systems biology of developing barley grains: a framework
	for modeling metabolism},
  booktitle = {{5th International Symposium on Integrative Bioinformatics, 20th
	to 22nd August 2008, Wittenberg, Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@INCOLLECTION{GraJunKos08b,
  author = {Grafahrend-Belau, E. and Junker, B.H. and Kosch{\"u}tzki, D. and
	Klukas, C. and Weise, S. and Scholz, U. and Schreiber, F.},
  title = {Towards systems biology of developing barley grains: a framework
	for modeling metabolism},
  booktitle = {{Institutstag IPK Gatersleben, 29th to 30th September 2008, Gatersleben,
	Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@ARTICLE{GraWeiKos08,
  author = {Grafahrend-Belau, E. and Weise, S. and Kosch{\"u}tzki, D. and Scholz,
	U. and Junker, B.H. and Schreiber, F.},
  title = {{ MetaCrop: a detailed database of crop plant metabolism}},
  journal = {{Nucleic Acids Research}},
  year = {2008},
  volume = {36},
  pages = {D954-D958},
  number = {suppl\_1},
  doi = {doi:10.1093/nar/gkm835},
  optpages = {{DXXX--DXXX}},
  owner = {scholz},
  timestamp = {2007.10.01}
}

@INCOLLECTION{GraWeiKos07b,
  author = {Grafahrend-Belau, E. and Weise, S. and Kosch{\"u}tzki, D. and Scholz,
	U. and Junker, B.H. and Schreiber, F.},
  title = {{MetaCrop: an information system for crop plant metabolism}},
  booktitle = {6th Plant Genomics European Meeting, Tenerife, Spain, 03.-06. October},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@INCOLLECTION{GraWeiKos07c,
  author = {Grafahrend-Belau, E. and Weise, S. and Kosch{\"u}tzki, D. and Scholz,
	U. and Junker, B.H. and Schreiber, F.},
  title = {{MetaCrop: an information system for crop plant metabolism}},
  booktitle = {Institutstag, IPK Gatersleben, 22.-23.10.2007},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@ARTICLE{GraThiZha05,
  author = {Graner, A. and Thiel, T. and Zhang, H. and Potokina, E. and Prasad,
	M. and Perovic, D. and Kota, R. and Varshney, R.K. and Scholz, U.
	and Grosse, I. and Stein, N.},
  title = {Molecular Mapping in Barley: Shifting from the Structural to the
	Functional Level},
  journal = {Czech J. Genet. Plant Breed},
  year = {2005},
  volume = {41},
  pages = {81--88},
  number = {3}
}

@INPROCEEDINGS{GroFunKue06,
  author = {Grosse, I. and Funke, T. and Kuenne, C. and Neumann, S. and Stephanik,
	A. and Thiel, T. and Weise, S.},
  title = {{Integrative Datenanalyse mit dem Plant Data Warehouse}},
  booktitle = {Ausgew{\"a}hlte Vortr{\"a}ge aus GPZ-Arbeitsgemeinschaften},
  year = {2006},
  volume = {70},
  series = {Vortr{\"a}ge f{\"u}r Pflanzenz{\"u}chtung},
  pages = {50--53},
  address = {G{\"o}ttingen},
  month = {M{\"a}rz},
  publisher = {Gesellschaft f{\"u}r Pflanzenz{\"u}chtung e.V. (GPZ)},
  language = {german}
}

@MASTERSTHESIS{Gue09,
  author = {G{\"u}nther, M.},
  title = {{Konzeption und Implementierung einer Textindexierungsinfrastruktur
	zur Parallelisierung von Suchmaschinen in den Lebenswissenschaften}},
  school = {{Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik}},
  year = {2009},
  type = {Diplomarbeit},
  owner = {weise},
  timestamp = {2009.07.27}
}

@INCOLLECTION{HarGraJun11,
  author = {Hartmann, A. and Grafahrend-Belau, E. and Junker, A. and Weise, S.
	and Klapperst{\"u}ck, M. and Junker, B. H. and Klukas, C. and Scholz,
	U. and Schreiber, F.},
  title = {Systems biology in crop plant metabolism: an integration and analysis
	pipeline},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.10.06}
}

@INCOLLECTION{HarJunGra10,
  author = {Hartmann, A. and Junker, A. and Grafahrend-Belau, E. and Klapperst{\"u}ck,
	M. and Hippe, K. and Colmsee, C. and Weise, S. and Scholz, U. and
	Junker, B.H. and Schreiber, F.},
  title = {{MetaCrop: an information system for crop plant metabolism}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@INCOLLECTION{HarWeiCol11,
  author = {Anja Hartmann and Stephan Weise and Christian Colmsee and Eva Grafahrend-Belau
	and Bj{\"o}rn H. Junker and Christian Klukas and Dirk Kosch{\"u}tzki
	and Matthias Lange and Uwe Scholz and Falk Schreiber},
  title = {{Systems Biology in Crop Plant Metabolism: an Integration and Analysis
	Pipeline}},
  booktitle = {{Plant Metabolic Engineering, 24th to 29th July 2011, Waterville
	Valley, USA}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.06.20}
}

@INCOLLECTION{HasSchSei10,
  author = {Haseneyer, G. and Schmutzer, T. and Seidel, M. and Sch{\"o}n, C.-C.
	and Mayer, K. and Scholz, U. and Stein, N. and Bauer, E.},
  title = {{GABI RYE-EXPRESS: Using next-generation technologies for improvement
	of genetic and genomic resources in rye}},
  booktitle = {{GABI-Statusseminar, 9th to 11th March 2010, Potsdam, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INCOLLECTION{HasSchSei09,
  author = {Haseneyer, G. and Schmutzer, T. and Seidel, M. and Sch{\"o}n, C.-C.
	and Mayer, K. and Scholz, U. and Stein, N. and Bauer, E.},
  title = {{RYE-EXPRESS: Establishing an EST resource for rye}},
  booktitle = {{PlantGEM 2009, 7--10 October, Lisbon}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.11.16}
}

@INCOLLECTION{HasSchSei10a,
  author = {Haseneyer, G. and Schmutzer, T. and Seidel, M. and Sch{\"o}n, C.-C.
	and Zhou, R. and Mayer, K. and Scholz, U. and Stein, N. and Bauer,
	E.},
  title = {{New genomics resources for rye Secale cereale L.)}},
  booktitle = {{Genomics-based breeding, Justus Liebig University in Giessen, 26th
	to 28th October 2010, Giessen, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.19}
}

@ARTICLE{HasSchSei11a,
  author = {Haseneyer, Grit and Schmutzer, Thomas and Seidel, Michael and Zhou,
	Rounan and Mascher, Martin and Sch{\"o}n, Chris-Carolin and Taudien,
	Stefan and Scholz, Uwe and Stein, Nils and Mayer, Klaus and Bauer,
	Eva},
  title = {{From RNA-seq to large-scale genotyping - genomics resources for
	rye (Secale cereale L.)}},
  journal = {BMC Plant Biology},
  year = {2011},
  volume = {11},
  pages = {e131},
  number = {1},
  doi = {10.1186/1471-2229-11-131},
  issn = {1471-2229},
  url = {http://www.biomedcentral.com/1471-2229/11/131}
}

@INCOLLECTION{HasSchSei11,
  author = {G. Haseneyer and T. Schmutzer and M. Seidel and R. Zhou and C.-C.
	Sch{\"o}n and U. Scholz and K. F. X. Mayer and N. Stein and E. Bauer},
  title = {{GABI RYE-EXPRESS: From RNA-seq to large scale genotyping � new
	genomic resources for rye (Secale cereale L.)}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@MASTERSTHESIS{Hei07,
  author = {Hei{\ss}, S.},
  title = {{ Entwicklung eines Data-Warehouses f{\"u}r pflanzengenetische Diversit{\"a}tsstudien}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2007},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Kuenne}},
  owner = {scholz},
  timestamp = {2007.08.17}
}

@MASTERSTHESIS{Her04,
  author = {Hertel, F.},
  title = {{Entwicklung einer datenbankgest{\"u}tzten Nutzerverwaltungs- und
	Zugriffsrechtekomponente als Middleware zwischen Web-Applikationen
	und molekularbiologischen Datenbanken}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2004},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}}
}

@ARTICLE{HipColCza10,
  author = {Klaus Hippe and Christian Colmsee and Tobias Czauderna and Eva Grafahrend-Belau
	and Bj{\"o}rn H. Junker and Christian Klukas and Uwe Scholz and Falk
	Schreiber and Stephan Weise},
  title = {{Novel Developments of the MetaCrop Information System for Facilitating
	Systems Biological Approaches}},
  journal = {Journal of Integrative Bioinformatics},
  year = {2010},
  volume = {7},
  pages = {e125},
  number = {3},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INPROCEEDINGS{HofLanSch01,
  author = {Hofest{\"a}dt, R. and Lange, M. and Scholz, U.},
  title = {{ Molecular Information Fusion for Metabolic Networks}},
  booktitle = {Gene Families: Studies of DNA, RNA, Enzymes and Proteins},
  year = {2001},
  editor = {Xue, G.X. and Xue, Y.B. and Xu, Z.H. and Holmes, R. and Hammond,
	G. and Lim, H.A.},
  pages = {221--232},
  publisher = {Singapore et al: World Scientific}
}

@INPROCEEDINGS{HofMisSch00,
  author = {Hofest{\"a}dt, R. and Mischke, U. and Scholz, U.},
  title = {{ Knowledge Acquisition, Management and Representation for the Diagnostic
	Support in Human Inborn Errors of Metabolism}},
  booktitle = {{Medical Infobahn for Europe: Proceedings of MIE2000 and GMDS2000,
	Hannover, August 27~-~September 1}},
  year = {2000},
  editor = {Hasman, A. and Blobel, B. and Dudeck, J. and Engelbrecht, R. and
	Gell, G. and Prokosch, H.-U.},
  pages = {857--862},
  publisher = {Amsterdam et al: IOS Press}
}

@ARTICLE{HofSch98,
  author = {Hofest{\"a}dt, R. and Scholz, U.},
  title = {{ Information Processing for the Analysis of Metabolic Pathways and
	Inborn Errors}},
  journal = {{BioSystems}},
  year = {1998},
  volume = {47},
  pages = {91--102},
  number = {1--2},
  publisher = {{Amsterdam et al: Elsvier}}
}

@MASTERSTHESIS{Kau06,
  author = {Kaule, U.},
  title = {{ Analyse und Strukturierung von Workflows im Anwendungsfeld bioinformatischer
	Prozesse}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2006},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Scholz}}
}

@MASTERSTHESIS{Kla07,
  author = {Klapperst{\"u}ck, K.},
  title = {{ Konzeption und Umsetzung einer Graphanfragesprache zur nicht-materialisierten
	Integration biologischer Datenquellen}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik },
  year = {2007},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Lange}}
}

@INPROCEEDINGS{KlaSchLan09,
  author = {Klapperst{\"u}ck, M. and Schmutzer, T. and Lange, M. and Scholz,
	U.},
  title = {{LIMS lite: a system for management and search of primary lab data}},
  booktitle = {International Workshop on Computational and Integrative Biology,
	Hangzhou, China, September 18--20},
  year = {2009},
  pages = {63},
  owner = {weise},
  timestamp = {2009.09.28}
}

@INCOLLECTION{KleBanWic10,
  author = {Klemme, S. and Banaei Moghaddam, A.M. and Wicker, T. and Dolezel,
	J. and Martis, M. and Schmutzer, T. and Bull, F. and Scholz, U. and
	Stein, N. and Mayer, K. and Houben, A.},
  title = {Evolution and drive mechanism of a selfish chromosome},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@INCOLLECTION{KleMarBan11,
  author = {Klemme, S. and Martis, M. and Banaei Moghaddam, A. M. and Blattner,
	F. and Macas, J. and Schmutzer, T. and Scholz, U. and Gundlach, H.
	and Wicker, T. and Novak, P. and Neumann, P. and Simkov{\'a}, H.
	and Dole\u{z}el, J. and Bauer, E. and Haseneyer, G. and Ma, L. and
	Fuchs, J. and Stein, N. and Mayer, K. and Houben, A.},
  title = {{Structure and Evolution of a Selfish Chromosome}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.10.06}
}

@ARTICLE{KloDeKGri08,
  author = {Kloosterman, B. and {De Koeyer}, D. and Griffiths, R. and Flinn,
	B. and Steuernagel, B. and Scholz, U. and Sonnewald, S. and Sonnewald,
	U. and Bryan, G.J. and Prat, S. and B{\'a}nfalvi, Z. and Hammond,
	J.P. and Geigenberger, P. and Nielsen, K.L. and Visser, R.G.F. and
	Bachem, C.W.B.},
  title = {{Genes driving potato tuber initiation and growth: Identification
	based on transcriptional changes using the POCI array}},
  journal = {Functional \& Integrative Genomics},
  year = {2008},
  volume = {8},
  pages = {329--340},
  number = {4},
  abstract = {Abstract The increasing amount of available expressed gene sequence
	data makes whole-transcriptome analysis of certain crop species possible.
	Potato currently has the second largest number of publicly available
	expressed sequence tag (EST) sequences among the Solanaceae. Most
	of these ESTs, plus other proprietary sequences, were combined and
	used to generate a unigene assembly. The set of 246,182 sequences
	produced 46,345 unigenes, which were used to design a 44K 60-mer
	oligo array (Potato Oligo Chip Initiative: POCI). In this study,
	we attempt to identify genes controlling and driving the process
	of tuber initiation and growth by implementing large-scale transcriptional
	changes using the newly developed POCI array. Major gene expression
	profiles could be identified exhibiting differential expression at
	key developmental stages. These profiles were associated with functional
	roles in cell division and growth. A subset of genes involved in
	the regulation of the cell cycle, based on their Gene Ontology classification,
	exhibit a clear transient upregulation at tuber onset indicating
	increased cell division during these stages. The POCI array allows
	the study of potato gene expression on a much broader level than
	previously possible and will greatly enhance analysis of transcriptional
	control mechanisms in a wide range of potato research areas. POCI
	sequence and annotation data are publicly available through the POCI
	database (http://pgrc.ipk-gatersleben.de/poci).},
  doi = {10.1007/s10142-008-0083-x},
  issn = {1438-793X},
  language = {english},
  optnumber = {XXX},
  optpages = {XXX--XXX},
  optvolume = {XXX},
  owner = {scholz},
  timestamp = {2008.05.06},
  url = {http://dx.doi.org/10.1007/s10142-008-0083-x}
}

@INCOLLECTION{KluRohCza09,
  author = {Klukas, C. and Rohn, H. and Czauderna, T. and Weise, S. and Colmsee,
	C. and Grafahrend-Belau, E. and Junker, B.H. and Lange, M. and Scholz,
	U. and Schreiber, F.},
  title = {{Tools for representation, analysis, simulation and visualization
	of metabolism}},
  booktitle = {{10th International Conference on Systems Biology (ICSB), August
	30 -- September 4, Stanford, USA}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.30}
}

@MASTERSTHESIS{Kop07,
  author = {Koopmann, J. H.},
  title = {{ Integrierte plattform�bergreifende Normalisierung von Expressionsdaten}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik },
  year = {2007},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Steuernagel}},
  owner = {scholz},
  timestamp = {2007.11.23}
}

@INCOLLECTION{KueDehGra07,
  author = {Kuenne, C. and Dehmer, K. and Graner, A. and Scholz, U. and Sretenovic
	Rajicic, T. and Totz, J. and Willner, E. and Grosse, I.},
  title = {{ DiSTo - The Diversity Studies Toolkit}},
  booktitle = {{Evaluierung der deutschen Bioinformatikzentren, Berlin, 01. - 02.03.2007}},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INCOLLECTION{KueDehGra07b,
  author = {Kuenne, C. and Dehmer, K. and Graner, A. and Scholz, U. and Sretenovic
	Rajicic, T. and Totz, J. and Willner, E. and Grosse, I.},
  title = {{ DiSTo - The Diversity Studies Toolkit}},
  booktitle = {Institutstag, IPK Gatersleben, 22-23.10.2007},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@INPROCEEDINGS{KueGroMat06,
  author = {Kuenne, C. and Grosse, I. and Matthies, I. and Scholz, U. and Sretenovic
	Rajicic, T. and Stein, N. and Stephanik, A. and Weise, S.},
  title = {{ Using Data Warehouse Technology in Crop Plant Bioinformatics}},
  booktitle = {Abstracts of the International Workshop Data Warehouse Technologies
	in Bioinformatics 2006, Wittenberg, December 4-6},
  year = {2006},
  pages = {{14}}
}

@INBOOK{KueGroMat08,
  pages = {375--389},
  title = {Using Data Warehouse Technology in Crop Plant Bioinformatics},
  publisher = {Shaker-Verlag},
  year = {2008},
  editor = {Hofest{\"a}dt, R. and T{\"}pel, T.},
  author = {Kuenne, C. and Grosse, I. and Matthies, I. and Scholz, U. and Sretenovic-Rajicic,
	T. and Stein, N. and Stephanik, A. and Steuernagel, B. and Weise,
	S.},
  series = {Yearbook Integrative Bioinformatics},
  booktitle = {Yearbook Integrative Bioinformatics},
  owner = {weise},
  timestamp = {2008.06.19}
}

@ARTICLE{KueGroMat07,
  author = {Kuenne, C. and Grosse, I. and Matthies, I. and Scholz, U. and Sretenovic-Rajicic,
	T. and Stein, N. and Stephanik, A. and Steuernagel, B. and Weise,
	S.},
  title = {{Using Data Warehouse Technology in Crop Plant Bioinformatics}},
  journal = {Journal of Integrative Bioinformatics},
  year = {2007},
  volume = {4},
  pages = {e88},
  number = {1},
  language = {english}
}

@INPROCEEDINGS{KumSchBor04,
  author = {Kumar, G. and Schlesier, B. and B{\"o}rner, A. and Scholz, U. and
	Mock, H.-P.},
  title = {{ Comparative seed proteome analysis of the parental lines of the
	Oregon Wolfe barley mapping population}},
  booktitle = {9th International Symposium on Plant Seeds: Seeds in the -omics Era,
	Gatersleben, May 15--19},
  year = {2004},
  pages = {107},
  note = {Poster}
}

@INCOLLECTION{KumSchSch03,
  author = {Kumar, G. and Schlesier, B. and Scholz, U. and Mock, H.-P.},
  title = {{ Evaluation of salt stress responses of barley accessions}},
  booktitle = {{Institutstag, IPK Gatersleben, 9.10.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{KoeLanHof02a,
  author = {K{\"o}hler, J. and Lange, M. and Hofest{\"a}dt, R.},
  title = {{ Unified access to molecular biological databases}},
  booktitle = {{Dechema Tagung: Gegenwart und Zukunft der bakteriellen Genomforschung
	in Deutschland, Heidelberg, Oktober 10-11}},
  year = {2002},
  note = {Poster},
  optnote = {{\tt http://www.dechema.de/veranstaltung/bgf2002/englisch/index.htm}},
  optpublisher = {XXX}
}

@INPROCEEDINGS{KoeLanHof02,
  author = {K{\"o}hler, J. and Lange, M. and Philippi, S. and Hofest{\"a}dt,
	R. and Schulze-Kremer, S.},
  title = {{ Collaborative Editing of Large Ontologies in SEMEDA}},
  booktitle = {{Workshop on Ontology for Biology, Heidelberg, November 7-8}},
  year = {2002},
  optnote = {{\tt http://projects.eml.org/sdbv/people/luca\_bernardi/bioontology/}},
  optpublisher = {XXX}
}

@ARTICLE{KohPhiLan03,
  author = {K{\"o}hler, J. and Philippi, S. and Lange, M.},
  title = {{ SEMEDA: ontology based semantic integration of biological databases}},
  journal = {{Bioinformatics}},
  year = {2003},
  volume = {19},
  pages = {2420--2427},
  number = {18}
}

@MASTERSTHESIS{Koe09,
  author = {K{\"o}hler, S.},
  title = {{Entwicklung einer Strategie zur Etablierung einer BarCyc-Datenbank
	mit Informationen {\"u}ber metabolische Netzwerke in der Gerste}},
  school = {Hochschule f{\"u}r Telekommunikation (FH), Leipzig},
  year = {2009},
  type = {Bachelorarbeit},
  owner = {weise},
  timestamp = {2009.08.14}
}

@MASTERSTHESIS{Kue02,
  author = {K{\"u}nne, C.},
  title = {{ Reengineering der B-EST Datenbank}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2002},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Scholz}}
}

@INCOLLECTION{KueGraSch05a,
  author = {K{\"u}nne, C. and Graner, A. and Scholz, U. and Stein, N. and Varshney,
	R.K. and Grosse, I.},
  title = {{Prediction of genetic mapping positions using sequence alignments}},
  booktitle = {{GPZ AG5 - Genetische Ressourcen: Erhaltungsstrategien und Management
	Pflanzengenetischer Ressourcen, Gatersleben, 15.~-~16.11.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{KueGraSch05b,
  author = {K{\"u}nne, C. and Graner, A. and Scholz, U. and Stein, N. and Varshney,
	R.K. and Grosse, I.},
  title = {{ Prediction of genetic mapping positions using sequence alignments}},
  booktitle = {{Institutstag, IPK Gatersleben, 13.10.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{KunGroSch03a,
  author = {K{\"u}nne, C. and Grosse, I. and Scholz, U.},
  title = {{ CR-EST The IPK Crop EST Database}},
  booktitle = {{German Conference on Bioinformatics '03, Neuherberg/Garching, 12.~-~14.10.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{KunLanFun04a,
  author = {K{\"u}nne, C. and Lange, M. and Funke, T. and Grosse, I. and Scholz,
	U.},
  title = {{ Crop Plant EST Information System: CR-EST}},
  booktitle = {{European Conference for Computational Biology, Glasgow, UK, 31.07.~-~04.08.2004}},
  year = {2004},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{KunLanFun04b,
  author = {K{\"u}nne, C. and Lange, M. and Funke, T. and Grosse, I. and Scholz,
	U.},
  title = {{ Crop Plant EST Information System: CR-EST}},
  booktitle = {{German Conference on Bioinformatics '04, Bielefeld, 04.~-~06.10.2004}},
  year = {2004},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@ARTICLE{KunLanFun05,
  author = {K{\"u}nne, C. and Lange, M. and Funke, T. and Miehe, H. and Grosse,
	I. and Scholz, U.},
  title = {{ CR--EST: a resource for crop ESTs}},
  journal = {{Nucleic Acids Research}},
  year = {2005},
  volume = {33},
  pages = {{D619--621}},
  number = {suppl\_1},
  eprint = {http://nar.oupjournals.org/cgi/reprint/33/suppl_1/D619.pdf},
  url = {http://nar.oupjournals.org/cgi/content/abstract/33/suppl_1/D619}
}

@INCOLLECTION{KunGroSch03b,
  author = {K{\"u}nne, C. and Zhang, H. and Grosse, I. and Scholz, U.},
  title = {{ CR-EST The IPK Crop EST Database}},
  booktitle = {{11th Molecular Markers Symposium of the GPZ, IPK Gatersleben, 16.~-~17.9.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@PHDTHESIS{Lan06,
  author = {Lange, M.},
  title = {{Methoden zum homogenen Zugriff und zur Integration heterogener,
	biologischer Datenquellen mittels beschr{\"a}nkter Zugriffsmuster}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik },
  year = {2006},
  type = {Dissertation},
  owner = {scholz},
  timestamp = {2006.08.30}
}

@INPROCEEDINGS{LanCheBor11,
  author = {Lange, M. and Chen, J. and Borck, D. and Colmsee, C. and Hippe, K.
	and Kormeier, B. and Weise, S. and Scholz, U.},
  title = {The {LAILAPS} {I}nformation {R}etrieval {P}ortal as {S}calable and
	{I}ntegrative {D}atabase {Q}uery {E}ndpoint},
  booktitle = {Proceedings of the 6th {I}nternational {S}ymposium on {H}ealth {I}nformatics
	and {B}ioinformatis},
  year = {2011},
  pages = {37},
  month = {2 } # may
}

@INPROCEEDINGS{LanCheBor11a,
  author = {Lange, M. and Chen, J. and Borck, D. and Colmsee, C. and Hippe, K.
	and Kormeier, B. and Weise, S. and Scholz, U.},
  title = {Building {I}nformation {R}etrieval {P}ortals using the lailaps search
	engine},
  booktitle = {Proceedings of the 6th {I}nternational {S}ymposium on {H}ealth {I}nformatics
	and {B}ioinformatis},
  year = {2011},
  pages = {90},
  month = {2 } # may,
  note = {Poster}
}

@INCOLLECTION{LanColFle10,
  author = {Lange, M. and Colmsee, C. and Flemming, S. and Chen, J. and Klapperst{\"u}ck,
	M. and Scholz, U.},
  title = {{The eDAL Suite: Tools and Concepts for Primary Data Citation}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@INBOOK{LanHimSch08,
  pages = {125-135},
  title = {{Data Linkage Graph: computation, querying and knowledge discovery
	of life science database networks}},
  publisher = {Shaker-Verlag},
  year = {2008},
  editor = {Hofest{\"a}dt, R. and T{\"}pel, T.},
  author = {Lange, M. and Himmelbach, A. and Schweizer, P. and Scholz, U.},
  series = {Yearbook Integrative Bioinformatics},
  journal = {Journal of Integrative Bioinformatics},
  owner = {lange},
  timestamp = {2007.09.19}
}

@INPROCEEDINGS{LanHimSch07a,
  author = {Lange, M. and Himmelbach, A. and Schweizer, P. and Scholz, U.},
  title = {Data Linkage Graph: computation, querying and knowledge discovery
	of life science database networks},
  booktitle = {Proceedings of the 4th Integrative Bioinformatics Workshop},
  year = {2007},
  editor = {R. Hofest{\"a}dt amd T. T{\"o}pel},
  pages = {105-116},
  owner = {lange},
  timestamp = {2007.09.19}
}

@ARTICLE{LanHimSch07,
  author = {Lange, M. and Himmelbach, A. and Schweizer, P. and Scholz, U.},
  title = {{Data Linkage Graph: computation, querying and knowledge discovery
	of life science database networks}},
  journal = {Journal of Integrative Bioinformatics},
  year = {2007},
  volume = {4},
  pages = {e68},
  number = {3},
  owner = {lange},
  timestamp = {2007.09.19}
}

@INPROCEEDINGS{LanKlaSpi08,
  author = {Lange, M. and Klapperst{\"u}ck, M. and Spies, K. and Scholz, U.},
  title = {{DALIGRES -- A Graph Query Tool to Unravel the Life Science Database
	Maze}},
  booktitle = {Proceedings of the Fourth International Bulgarian--Greek Scientific
	Conference --- Computer Science 2008, 18 -- 19 September '08, Kavala,
	Greece},
  year = {2008},
  pages = {603--614},
  owner = {weise},
  timestamp = {2008.10.02}
}

@INCOLLECTION{LanKumMun03,
  author = {Lange, M. and Kumanduri, V. and M{\"u}nch, T. and Schnee, R. and
	Scholz, U. and Schweizer, P.},
  title = {{ DBOra: An Integrated Database for Context Based Search and Browsing
	in Protein Data}},
  booktitle = {{European Conference for Computational Biology, Paris, France, 27.~-~30.9.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{LanKoeSch02,
  author = {Lange, M. and K{\"o}hler, J. and Schweizer, P.},
  title = {{ Algebraic Concepts for Data Domains in Life Science}},
  booktitle = {Poster Abstracts of the European Conference on Computational Biology
	2002, Saarbr{\"u}cken, October 6--9},
  year = {2002},
  editor = {Lengauer, T. and Lenhof, H.-P. and Christmann, R.},
  pages = {134--135},
  note = {Poster}
}

@ARTICLE{LanSch07,
  author = {Lange, M. and Scholz, U.},
  title = {{ Datenverarbeitung in der Biologie}},
  journal = {{iX Magazin f{\"u}r professionelle Informationstechnik}},
  year = {2007},
  pages = {{106--109}},
  number = {3},
  publisher = {{Verlag Heinz Heise}}
}

@INCOLLECTION{LanSch06,
  author = {Lange, M. and Scholz, U.},
  title = {{ Data Networks: interconnecting molecular measurements and knowledge
	in life science databases}},
  booktitle = {Integrative Bioinformatics, 3rd annual meeting, 4th to 6th September
	2006, Rothamsted, UK},
  year = {2006},
  note = {Poster},
  owner = {scholz},
  timestamp = {2006.08.31}
}

@INCOLLECTION{LanSchCol11,
  author = {Lange, M. and Sch{\"u}ler, D. and Colmsee, C. and Flemming, S. and
	Arend, D. and Scholz, U.},
  title = {{LIMSOPHY - How to implement a LIMS at IPK}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.10.06}
}

@INCOLLECTION{LanSigKun03,
  author = {Lange, M. and Sigmund, R. and K{\"u}nne, C. and Grosse, I. and Scholz,
	U.},
  title = {{ Activities for functional annotations of crop ESTs}},
  booktitle = {{Institutstag, IPK Gatersleben, 9.10.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@ARTICLE{LanSpiBar10,
  author = {Matthias Lange and Karl Spies and Joachim Bargsten and Gregor Haberhauer
	and Matthias Klapperst{\"u}ck and Michael Leps and Christian Weinel
	and R{\"o}bbe W{\"u}nschiers and Mandy Wei{\ss}bach and Jens Stein
	and Uwe Scholz},
  title = {{The LAILAPS Search Engine: Relevance Ranking in Life Science Databases}},
  journal = {Journal of Integrative Bioinformatics},
  year = {2010},
  volume = {7},
  pages = {e110},
  number = {2},
  owner = {weise},
  timestamp = {2010.02.04}
}

@INPROCEEDINGS{LanSpiBar09,
  author = {Lange, M. and Spies, K. and Bargsten, J. and Wei{\ss}bach, M. and
	Klapperst{\"u}ck, M. and Scholz},
  title = {{ The LAILAPS Search Engine: Relevance Ranking in Life Science Databases}},
  booktitle = {International Workshop on Computational and Integrative Biology,
	Hangzhou, China, September 18--20},
  year = {2009},
  pages = {62--63}
}

@ARTICLE{LanSpiCol10,
  author = {Matthias Lange and Karl Spies and Christian Colmsee and Steffen Flemming
	and Matthias Klapperst{\"u}ck and Uwe Scholz},
  title = {{The LAILAPS Search Engine: A Feature Model for Relevance Ranking
	in Life Science Databases}},
  journal = {Journal of Integrative Bioinformatics},
  year = {2010},
  volume = {7},
  pages = {e118},
  number = {3},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INPROCEEDINGS{LanSreMue04,
  author = {Lange, M. and Sreenivasulu, N. and M{\"u}nch, T. and Schweizer, P.
	and Weschke, W. and Scholz, U.},
  title = {{ DBOra: a new tool for automatic functional DNA sequence annotation}},
  booktitle = {9th International Symposium on Plant Seeds: Seeds in the -omics Era,
	Gatersleben, May 15--19},
  year = {2004},
  pages = {92--93},
  note = {Poster}
}

@INCOLLECTION{LanSreSch06,
  author = {Lange, M. and Sreenivasulu, N. and Scholz, U.},
  title = {{ Database Networks: a basis for functional classification of biological
	data}},
  booktitle = {Plant \& Animal Genome XIV Conference Abstracts, San Diego, January
	14--18},
  year = {2006},
  note = {Poster}
}

@INCOLLECTION{LanSreSch05,
  author = {Lange, M. and Sreenivasulu, N. and Scholz, U.},
  title = {{ Multidimensional data mining approaches for in-silico gene expression
	across species}},
  booktitle = {{Institutstag, IPK Gatersleben, 13.10.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{LanSreSch04,
  author = {Lange, M. and Sreenivasulu, N. and Scholz, U.},
  title = {{ Automated EST Annotation for a Comparable Functional Gene Expression
	Study}},
  booktitle = {{German Conference on Bioinformatics '04, Bielefeld, 04.~-~06.10.2004}},
  year = {2004},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INPROCEEDINGS{LanSreSte05,
  author = {Lange, M. and Sreenivasulu, N. and Stephanik, A. and Scholz, U.},
  title = {{ Data relationship mining in life science databases}},
  booktitle = {Abstracts of the International Workshop Integrative Bioinformatics
	2005, Bielefeld, July 4--5},
  year = {2005},
  editor = {Hofest{\"a}dt, R.},
  pages = {{9--12}}
}

@INCOLLECTION{LanSteSte06,
  author = {Lange, M. and Steuernagel, B. and Stephanik, A. and Rutkowski, T.
	and Scholz, U.},
  title = {{ Functional profiles of gene expression data}},
  booktitle = {{Institutstag, IPK Gatersleben, 10.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.21}
}

@INCOLLECTION{LanWeiKla09,
  author = {Lange, M. and Wei{\ss}bach, M. and Klapperst{\"u}ck, M. and Flemming,
	S. and Scholz, U.},
  title = {{The LAILAPS Search Engine: A Text Index Infrastructure for Relevance
	Ranking over Life Science Database Entries}},
  booktitle = {{German Conference on Bioinformatics 2009, 28th to 30th September
	2009, Martin Luther University Halle-Wittenberg, Germany, Short Papers
	and Poster Abstracts}},
  year = {2009},
  editor = {Grosse, I. and Neumann, S. and Posch, S. and Schreiber, F. and Stadler,
	P.},
  pages = {142},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.30}
}

@INCOLLECTION{LueHabPer11,
  author = {L{\"u}pken, T. and Habekuss, A. and Perovic, D. and Kr{\"a}mer, I.
	and H{\"a}hnel, U. and Steuernagel, B. and Ariyadasa, R. and Zhou,
	R. and Stein, N. and Martis, M. and Mayer, K. and Ordon, F.},
  title = {{High resolution mapping of the BaMMV/BaYMV resistance gene rym11
	by employing synteny and next generation sequencing data for marker
	saturation}},
  booktitle = {{VIIIth International Working Group of Plant Viruses with Fungal
	Vectors, 6th to 8th July 2011, Louvain-la-Neuve, Belgium}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.06.20}
}

@ARTICLE{MamCocThi11,
  author = {Mameaux, Sabine and Cockram, James and Thiel, Thomas and Steuernagel,
	Burkhard and Stein, Nils and Taudien, Stefan and Jack, Peter and
	Werner, Peter and Gray, John C. and Greenland, Andy J. and Powell,
	Wayne},
  title = {{Molecular, phylogenetic and comparative genomic analysis of the
	cytokinin oxidase/dehydrogenase gene family in the Poaceae}},
  journal = {Plant Biotechnology Journal},
  year = {2011},
  note = {doi: 10.1111/j.1467-7652.2011.00645.x},
  doi = {10.1111/j.1467-7652.2011.00645.x},
  issn = {1467-7652},
  keywords = {wheat, barley, molecular phylogeny, comparative mapping, cytokinin
	oxidase, cytokinin oxidase/dehydrogenases 2},
  owner = {weise},
  publisher = {Blackwell Publishing Ltd},
  timestamp = {2011.08.16},
  url = {http://dx.doi.org/10.1111/j.1467-7652.2011.00645.x}
}

@INCOLLECTION{MarGunMay09,
  author = {Martis, M. and Gundlach, H. and Mayer, K.F.X. and Taudien, S. and
	Simkov{\'a}, H. and Such{\'a}nkov{\'a}, P. and Dole\u{z}el, J. and
	Stein, N. and Scholz, U. and Steuernagel, B. and Graner, A. and Wicker,
	T. and Petzold, A. and Felder, M. and Platzer, M.},
  title = {{Unraveling the Barley Genome from Short Sequence Reads}},
  booktitle = {{German Conference on Bioinformatics 2009, 28th to 30th September
	2009, Martin Luther University Halle-Wittenberg, Germany, Short Papers
	and Poster Abstracts}},
  year = {2009},
  editor = {Grosse, I. and Neumann, S. and Posch, S. and Schreiber, F. and Stadler,
	P.},
  pages = {117},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.30}
}

@INCOLLECTION{MasColHar11,
  author = {Mascher, M. and Colmsee, C. and Hartmann, A. and Czauderna, T. and
	Schl{\"u}ter, U. and Schreiber, F. and Scholz, U.},
  title = {Co-expression network analysis identifies hub genes in maize},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.10.06}
}

@INCOLLECTION{MasSchFri11,
  author = {Mascher, Martin and Scholz, Uwe and Friedel, Swetlana},
  title = {Chargaff's second rule in plant genomes},
  booktitle = {{12th International Conference on Systems Biology, 28th August to
	1st September 2011, Heidelberg/Mannheim, Germany}},
  year = {2001},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.11.14}
}

@INCOLLECTION{MatFoeWei07,
  author = {Matthies, I.E. and F{\"o}rster, J. and Weise, S. and Scholz, U. and
	R{\"o}der, M.S.},
  title = {{ SNP- and INDEL-Marker-Development for Candidate Genes associated
	with Malting Quality Traits}},
  booktitle = {GABI-Statusseminar, Potsdam, 6. - 8. M{\"a}rz},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2007.03.15}
}

@INCOLLECTION{MatMalWei11,
  author = {Inge Matthies and Marcos Malosetti and Stephan Weise and Fred van
	Eeuwijk and Marion S. R{\"o}der},
  title = {{GENOBAR: Genome wide Association Mapping for Kernel and Malting
	Quality Traits Using Historical European Barley Records}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@INCOLLECTION{MatRodWei06,
  author = {Matthies, I. and R{\"o}der, M. and Weise, S. and Scholz, U.},
  title = {{ SNP detection and haplotype analysis in candidate genes with impact
	on malting quality}},
  booktitle = {{Plant Nutrition meets Plant Breeding - 1st Joint Conference of The
	German Society for Plant Nutrition - DGP (Annual Meeting) and The
	Research Centre Biotechnology \& Plant Breeding Uni Hohenheim - FSP
	(21st Colloquium), University of Hohenheim, Stuttgart, Germany, September
	26th~-~28th 2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.21}
}

@ARTICLE{MatWeiFoe09,
  author = {Matthies, I.E. and Weise, S. and F{\"o}rster, J. and R{\"o}der, M.},
  title = {Association mapping and marker development of the candidate genes
	(1$\rightarrow$3),(1$\rightarrow$4)-$\beta$-D-Glucan-4-glucanohydrolase
	and (1$\rightarrow$4)-$\beta$-Xylan-endohydrolase 1 for malting quality
	in barley.},
  journal = {Euphytica},
  year = {2009},
  volume = {170},
  pages = {109--122},
  number = {1--2},
  month = {November},
  note = {DOI: 10.1007/s10681-009-9915-6},
  doi = {10.1007/s10681-009-9915-6},
  owner = {weise},
  timestamp = {2009.03.03}
}

@ARTICLE{MatWeiRoe08,
  author = {Matthies, I. and Weise, S. and R{\"o}der, M.},
  title = {Association of haplotype diversity in the $\alpha$-amylase gene amy1
	with malting quality parameters in barley},
  journal = {Molecular Breeding},
  year = {2009},
  volume = {23},
  pages = {139--152},
  number = {1},
  month = {January},
  doi = {10.1007/s11032-008-9221-3},
  owner = {weise},
  timestamp = {2008.09.05}
}

@INCOLLECTION{MatWeiRoe09,
  author = {Matthies, I. and Weise, S. and R{\"o}der, M.},
  title = {{Population structure, linkage disequilibrium and association analysis
	in a set of European barley cultivars characterized by DArT and SSR-markers}},
  booktitle = {{EUCARPIA XIV Meeting of the Biometrics in Plant Breeding, 2nd to
	4th September 2009, Dundee, UK}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.07.24}
}

@INCOLLECTION{MatWeiRoe09a,
  author = {Matthies, I. and Weise, S. and R{\"o}der, M.},
  title = {{Population structure, linkage disequilibrium and association analysis
	in a set of European barley cultivars characterised by DArT and SSR-markers}},
  booktitle = {{Institutstag IPK Gatersleben, 12th to 14th October 2009, Gatersleben,
	Germany}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.23}
}

@INCOLLECTION{MatWeiSch07,
  author = {Matthies, I.E. and Weise, S. and Scholz, U. and F{\"o}rster, J. and
	R{\"o}der, M.S.},
  title = {Association genetics for malting quality in barley},
  booktitle = {Institutstag, IPK Gatersleben, 22.-23.10.2007},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@INCOLLECTION{MatWeiSch10,
  author = {Matthies, I.E. and Weise, S. and Scholz, U. and R{\"o}der, M.},
  title = {{Population structure, linkage disequilibrium and association analysis
	in a set of European barley cultivars characterized by DArT and SSR-markers}},
  booktitle = {{GABI-Statusseminar, 9th to 11th March 2010, Potsdam, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INCOLLECTION{MatWeiSch08a,
  author = {Matthies, I.E. and Weise, S. and Scholz, U. and R{\"o}der, M.S.},
  title = {Association genetics for malting quality in barley},
  booktitle = {{GABI-Statusseminar, Potsdam, 04.-06.03.2008}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@ARTICLE{MatShaWei11,
  author = {Matthies, Inge E. and Sharma, Shailendra and Weise, Stephan and 
	R{\"o}der, Marion S.},
  title = {{Sequence variation in the barley genes encoding sucrose synthase
	I and sucrose phosphate synthase II, and its association with variation
	in grain traits and malting quality}},
  journal = {Euphytica},
  year = {2011},
  note = {(accepted)},
  owner = {weise},
  timestamp = {2011.11.14}
}

@INPROCEEDINGS{MatWeiRoe10,
  author = {Inge E. Matthies and Stephan Weise and Marion S. R{\"o}der},
  title = {{Assoziationskartierung in Gerste -- Ein genomweiter und Kandidatengenansatz}},
  booktitle = {Bericht der 60. Tagung der Vereinigung der Pflanzenz{\"u}chter und
	Saatgutkaufleute {\"O}sterreichs, 24.--26. November 2009, Gumpenstein},
  year = {2010},
  pages = {91--96},
  owner = {weise},
  timestamp = {2010.02.26}
}

@INCOLLECTION{MatWeiRoe10a,
  author = {Matthies, Inge E. and Weise, Stephan and R{\"o}der, Marion S.},
  title = {Association mapping in barley -- a genome wide and candidate gene
	approach},
  booktitle = {{GPZ-Tagung, 15th to 17th March 2010, Freising, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.02.03}
}

@ARTICLE{MayTauMar09,
  author = {Mayer, K.F.X. and Taudien, S. and Martis, M. and \u{S}imkov{\'a},
	H. and Such{\'a}nkov{\'a}, P. and Gundlach, H. and Wicker, T. and
	Petzold, A. and Felder, M. and Steuernagel, B. and Scholz, U. and
	Graner, A. and Platzer, M. and Dole\u{z}el, J. and Stein, N.},
  title = {{Gene content and virtual gene order of barley chromosome 1H}},
  journal = {Plant Physiology},
  year = {2009},
  volume = {151},
  pages = {496--505},
  number = {2},
  doi = {10.1104/pp.109.142612},
  owner = {weise},
  timestamp = {2009.08.14},
  url = {http://dx.doi.org/10.1104/pp.109.142612}
}

@ARTICLE{MayMarHed11,
  author = {Mayer, Klaus F. X. and Martis, Mihaela and Hedley, Pete E. and \u{S}imkov{\'a},
	Hana and Liu, Hui and Morris, Jenny A. and Steuernagel, Burkhard
	and Taudien, Stefan and Roessner, Stephan and Gundlach, Heidrun and
	Kubal{\'a}kov{\'a}, Marie and Such{\'a}nkov{\'a}, Pavla and Murat,
	Florent and Felder, Marius and Nussbaumer, Thomas and Graner, Andreas
	and Salse, Jerome and Endo, Takashi and Sakai, Hiroaki and Tanaka,
	Tsuyoshi and Itoh, Takeshi and Sato, Kazuhiro and Platzer, Matthias
	and Matsumoto, Takashi and Scholz, Uwe and Dole\u{z}el, Jaroslav
	and Waugh, Robbie and Stein, Nils},
  title = {{Unlocking the Barley Genome by Chromosomal and Comparative Genomics}},
  journal = {The Plant Cell},
  year = {2011},
  volume = {23},
  pages = {1249--1263},
  number = {4},
  doi = {10.1105/tpc.110.082537},
  eprint = {http://www.plantcell.org/content/early/2011/04/05/tpc.110.082537.full.pdf+html},
  url = {http://www.plantcell.org/content/early/2011/04/05/tpc.110.082537.abstract}
}

@INCOLLECTION{MayMarPou11,
  author = {K. F. X. Mayer and M. Martis and N. Poursarebani and P. E. Hedley
	and H. \v{S}imkov{\'a} and H. Liu and J. A. Morris and B. Steuernagel
	and S. Taudien and S. Roessner and H. Gundlach and T. Nussbaumer
	and M. Kubal{\'a}kov{\'a} and, P. Such{\'a}nkov{\'a} and F. Murat
	and M. Felder and A. Graner and J. Salse and T. Endo and H. Sakai
	and T. Tanaka and T. Itoh and K. Sato and M. Platzer and T. Matsumoto
	and U. Scholz and J. Dole\v{z}el and R. Waugh and N. Stein},
  title = {{GenomeZipper: A Synteny Driven Approach to Unlock the Barley Genome}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@INCOLLECTION{MurSchSch11,
  author = {Moses M. Muraya and Thomas Schmutzer and Uwe Scholz and Thomas Altmann},
  title = {{Plant-KBBE Cornfed: Integration of advanced mapping and phenotyping
	methods to identify key alleles for building European maize ideotypes
	- genetic and phenotypic analysis of biomass production and water
	use efficiency (WUE)}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@ARTICLE{NagVogLan09,
  author = {Nagel, M. and Vogel, H. and Landjeva, S. and Buck-Sorlin, G. and
	Lohwasser, U. and Scholz, U. and B{\"o}rner, A.},
  title = {Seed conservation in ex situ genebanks -- genetic studies on longevity
	in barley},
  journal = {Euphytica},
  year = {2009},
  volume = {170},
  pages = {5--14},
  number = {1--2},
  note = {DOI: 10.1007/s10681-009-9975-7},
  doi = {10.1007/s10681-009-9975-7},
  owner = {weise},
  timestamp = {2009.07.24}
}

@ARTICLE{NavWeiLoh09,
  author = {Navakode, S. and Weidner, A. and Varshney, R.K. and Lohwasser, U.
	and Scholz, U. and B{\"o}rner, A.},
  title = {{A QTL analysis of aluminium tolerance in barley, using gene-based
	markers}},
  journal = {Cereal Research Communications},
  year = {2009},
  volume = {37},
  pages = {531--540},
  number = {4},
  doi = {10.1556/CRC.37.2009.4.6},
  owner = {weise},
  timestamp = {2009.08.14}
}

@INCOLLECTION{NehWeiWit11,
  author = {Stephanie Nehrlich and Stephan Weise and Steffi Witter and Evelin
	Willner and Uwe Scholz and Klaus J. Dehmer},
  title = {{DiSTo2 -- a diversity studies toolkit for phenotypic, genotypic
	and passport data of genebank accessions}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2011, Gatersleben,
	Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.09.27}
}

@INCOLLECTION{OrdRodLan11,
  author = {Frank Ordon and Jeannette Rode and Tina Lange and Benjamin Kilian
	and Raj Pasam, Andreas Graner and Marion R{\"o}der, Inge Matthies
	and Stephan Weise and Uwe Scholz and Frauke Urban and Jutta Ahlemeyer
	and Wolfgang Friedt and Inka Gawenda and Karl Schmid and J{\"o}rg
	Gro�er and Viktor Korzun and Jens Weyen and Jutta F{\"o}rster and
	Reinhard Hemker and Franziska Wespel and Eberhard Laubach and Erich
	Knopf and Hubert Bl{\"u}mel and Heidi Jaiser and Peter Greif and
	Laszlo Cselenyi and Uwe Stephan},
  title = {{GABI GENOBAR: A genome-wide approach to associate genetic diversity
	with agronomically important traits in barley}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@INCOLLECTION{PauFroSch03,
  author = {Paul, G. and Fr{\"o}hlich, N. and Scholz, U.},
  title = {{ Computer supported engineering processes~-~an application field
	for cooperation for computer scientists and engineers}},
  booktitle = {{Jubilee scientific conference 50 years university of chemical technology
	and metallurgy, Sofia, Bulgarien, 4.~-~5. June, 2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{PerWeySch06,
  author = {Perovic, D. and Weyen, J. and Schondelmaier, J. and F{\"o}rster,
	J. and Devaux, P. and Hariri, D. and Guilleroux, M. and Feuerhelm,
	D. and Scholz, U. and Kastirr, U. and Ordon, F.},
  title = {{ Mapping and comparative analysis with rice and barley of Soil-borne
	cereal mosaic virus (SBCMV) resistance in hexaploid wheat}},
  booktitle = {Plant Genetics Conference, Kiel, September 20--23},
  year = {2006},
  note = {Poster},
  owner = {scholz},
  timestamp = {2006.09.15}
}

@MASTERSTHESIS{Puk03,
  author = {Pukall, M.},
  title = {{Interaktive Visualisierung von Sequenzalignments und Open Reading
	Frames}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2003},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}}
}

@INCOLLECTION{RadSchSaa07,
  author = {Radchuk, R. and Scholz, U. and Saalbach, I. and Weschke, W. and Weber,
	H.},
  title = {Identification and analysis of seed-specific transcription factors
	from pea},
  booktitle = {6th European Conference on Grain Legumes, Lisbon, Portugal, 12.-16.
	November},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@MASTERSTHESIS{Rie06,
  author = {Riedel, A.},
  title = {{ Konzept zur Daten- und Anwendungsintegration zur Analyse von Gen-Expressionsdaten}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2006},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Stephanik}}
}

@INCOLLECTION{RodMatKil08,
  author = {Rode, J. and Matthies, I.E. and Kilian, B. and Weise, S. and Ahlemeyer,
	J. and Urban, F. and Weyen, J. and Korzun, V. and Schmid, K. and
	R{\"o}der, M.S. and Scholz, U. and Friedt, W. and Graner, A. and
	Ordon, F.},
  title = {{A genome wide approach to associate genetic diversity to agronomically
	important traits in barley (GABI-GENOBAR)}},
  booktitle = {7th Plant Genomics European Meeting (Plant GEM), 24th to 27th September
	2008, Albena, Bulgaria},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.17}
}

@MASTERSTHESIS{Rut06,
  author = {Rutkowski, T.},
  title = {{ Entwurf und Entwicklung einer Datenbankl{\"o}sung zur Verwaltung
	des IPK Barley Tissue Panels}},
  school = {Fachhochschule Harz, Wernigerode, Fachbereich Automatisierung und
	Informatik },
  year = {2006},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Lange, Scholz}}
}

@MASTERSTHESIS{Rut05a,
  author = {Rutkowski, T.},
  title = {{ Konzeption und Implementation einer plattformunabh{\"a}ngigen Importsoftware
	f{\"u}r ORACLE Datenbanken}},
  school = {Fachhochschule Harz, Wernigerode, Fachbereich Automatisierung und
	Informatik },
  year = {2005},
  type = {Projektarbeit},
  optnote = {{Betreuer: Lange, Scholz}}
}

@MASTERSTHESIS{Rut04,
  author = {Rutkowski, T.},
  title = {{ Weiterentwicklung der FLAREX-Datenbank~-~Erstellung der Benutzerschnittstelle}},
  school = {Fachhochschule Harz, Wernigerode, Fachbereich Automatisierung und
	Informatik },
  year = {2004},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}}
}

@INCOLLECTION{RutZieBae05,
  author = {Rutkowski, T. and Zierold, A. and B{\"a}umlein, H. and Scholz, U.
	and H{\"a}hnel, U. and Altschmied, L.},
  title = {{ Barley Tissue Panel First Steps}},
  booktitle = {{Institutstag, IPK Gatersleben, 13.10.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@UNPUBLISHED{flarex07,
  author = {Rutkowski, T. Flemming, S. and Lange, M. and Steuernagel, B. and
	Weise, S. and Stephanik, A. and Spies, K. and Scholz, U.},
  title = {{FLAREX: the IPK array experiment database}},
  note = {http://pgrc.ipk-gatersleben.de/flarex},
  year = {2007}
}

@INCOLLECTION{SchBoeBuc10,
  author = {Schl{\"u}ter, U. and Boernke, F. and Bucher, M. and Dresselhaus,
	T. and Fahnenstich, H. and Fernie, A. and Scholz, U. and Schreiber,
	F. and Weber, A. and Sonnewald, U.},
  title = {{OPTIMAS -- Optimisation of biomass production in maize}},
  booktitle = {{GABI-Statusseminar, 9th to 11th March 2010, Potsdam, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.16}
}

@MASTERSTHESIS{Sch08,
  author = {Schmidt, R.},
  title = {{Visualisierung komplexer biologischer 3D-Datens{\"a}tze {\"u}ber
	ein Client-Server-System}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme},
  year = {2008},
  type = {Studienarbeit},
  owner = {weise},
  timestamp = {2008.10.27}
}

@MASTERSTHESIS{Sch08a,
  author = {Schmutzer, T.},
  title = {{Evaluierung von Assemblierungswerkzeugen f{\"u}r Hochdurchsatz-Sequenzierungs-Techniken}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik},
  year = {2008},
  type = {Diplomarbeit},
  owner = {weise},
  timestamp = {2009.01.29}
}

@INCOLLECTION{SchHasPie09,
  author = {Schmutzer, T. and Haseneyer, G. and Pietsch, C. and Zhou, R. and
	Seidel, M. and Mayer, K. and Sch{\"o}n, C. and Bauer, E. and Scholz,
	U. and Stein, N.},
  title = {{Exploring the genomic diversity in rye using a SNP detection pipeline}},
  booktitle = {{Institutstag IPK Gatersleben, 12th to 14th October 2009, Gatersleben,
	Germany}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.23}
}

@INCOLLECTION{SchHasPie09a,
  author = {Schmutzer, T. and Haseneyer, G. and Pietsch, C. and Zhou, R. and
	Seidel, M. and Mayer, K.F.X. and Sch{\"o}n, C.-C. and Scholz, U.
	and Stein, N. and Bauer, E.},
  title = {{Exploring the Genomic Diversity in Rye Using a SNP Detection Pipeline}},
  booktitle = {{GENOME INFORMATICS 2009, October 27 - 30, Cold Spring Harbor Laboratory
	(New York)}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.11.16}
}

@INCOLLECTION{SchSchSte09,
  author = {Schmutzer, T. and Scholz, U. and Stein, N. and Sch{\"o}n, C.-C. and
	Haseneyer, G. and Bauer, E. and Mayer, K.F.X. and Seidel, M.},
  title = {{Exploring the Genomic Diversity in Rye Using a SNP Detection Pipeline}},
  booktitle = {{German Conference on Bioinformatics 2009, 28th to 30th September
	2009, Martin Luther University Halle-Wittenberg, Germany, Short Papers
	and Poster Abstracts}},
  year = {2009},
  editor = {Grosse, I. and Neumann, S. and Posch, S. and Schreiber, F. and Stadler,
	P.},
  pages = {133},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.30}
}

@INCOLLECTION{SchSteBul10a,
  author = {Schmutzer, T. and Steuernagel, B. and Bull, F. and Klemme, S. and
	Houben, A. and Scholz, U. and Stein, N.},
  title = {{K-mer Analysis to Reveal Genomic Ambiguities in Highly Repetitive
	Genomes}},
  booktitle = {{Genome Informatics, 15th to 19th September 2010, Wellcome Trust
	Conference Centre Hinxton, United Kingdom}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.02.03}
}

@INCOLLECTION{SchSteBul10,
  author = {Schmutzer, T. and Steuernagel, B. and Bull, F. and Klemme, S. and
	Houben, A. and Stein, N. and Scholz, U.},
  title = {{K-mer Analysis to Reveal Genomic Ambiguities in Highly Repetitive
	Plant Genomes}},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@INCOLLECTION{SchSteBul10b,
  author = {Schmutzer, T. and Steuernagel, B. and Bull, F. and Klemme, S. and
	Houben, A. and Stein, N. and Scholz, U.},
  title = {{K-mer Analysis to Reveal Genomic Ambiguities in Highly Repetitive
	Plant Genomes}},
  booktitle = {{10th Gatersleben Research Conference, 22nd to 24th November 2010,
	Quedlinburg/Gatersleben, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.02.03}
}

@INCOLLECTION{SchSteSch08,
  author = {Schmutzer, T. and Steuernagel, B. and Scholz, U.},
  title = {{DNA-sequencing-assembler in comparison}},
  booktitle = {{Plant Science Student Conference, 4th annual meeting}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@PHDTHESIS{Sch02,
  author = {Scholz, U.},
  title = {{ FRIDAQ- Ein Framework zur Integration molekularbiologischer Datenbest{\"a}nde}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik },
  year = {2002},
  type = {Dissertation},
  owner = {scholz},
  timestamp = {2006.08.30}
}

@INPROCEEDINGS{SchMecSei09,
  author = {Schoor, W. and Mecke, R. and Seiffert, U, and Bollenbeck, F. and
	Scholz, U.},
  title = {Remote Rendering of Large Biological Datasets},
  booktitle = {Proceedings of the Fourth International Conference on Computer Graphics
	Theory and Applications (GRAPP 2009), 5th - 9th February 2009, Lisboa,
	Portugal},
  year = {2009},
  editor = {Ranchordas, A.K. and Pereira, J. and Richard, P.},
  pages = {223--227},
  owner = {weise},
  timestamp = {2009.05.04}
}

@ARTICLE{SchColCza11,
  author = {Schreiber, Falk and Colmsee, Christian and Czauderna, Tobias and
	Grafahrend-Belau, Eva and Hartmann, Anja and Junker, Astrid and Junker,
	Bj{\"o}rn H. and Klapperst{\"u}ck, Matthias and Scholz, Uwe and Weise,
	Stephan},
  title = {{MetaCrop 2.0: managing and exploring information about crop plant
	metabolism}},
  journal = {Nucleic Acids Research},
  year = {2011},
  note = {(accepted)},
  owner = {weise},
  timestamp = {2011.11.14}
}

@ARTICLE{SchPfiVol09,
  author = {Sch{\"a}fer, P. and Pfiffi, S. and Voll, L.M. and Zajic, D. and Chandler,
	P.M. and Waller, F. and Scholz, U. and Pons-K{\"u}hnemann, J. and
	Sonnewald, S. and Sonnewald, U. and Kogel, K.-H.},
  title = {Manipulation of plant innate immunity and gibberellin as factor of
	compatibility in the mutualistic association of barley roots with
	{P}iriformospora indica},
  journal = {The Plant Journal},
  year = {2009},
  volume = {59},
  pages = {461--474},
  number = {3},
  doi = {10.1111/j.1365-313X.2009.03887.x},
  owner = {weise},
  timestamp = {2009.05.04}
}

@ARTICLE{SchPfiVol09a,
  author = {Sch{\"a}fer, P. and Pfiffi, S. and Voll, L.M. and Zajic, D. and Chandler,
	P.M. and Waller, F. and Scholz, U. and Pons-K{\"u}hnemann, J. and
	Sonnewald, S. and Sonnewald, U. and Kogel, K.-H.},
  title = {{Phytohormones in plant root-Piriformospora indica mutualism}},
  journal = {Plant Signaling \& Behavior},
  year = {2009},
  volume = {4},
  pages = {669--671},
  number = {7},
  owner = {weise},
  timestamp = {2009.07.27},
  url = {http://www.landesbioscience.com/journals/psb/article/9038}
}

@MASTERSTHESIS{Sch11,
  author = {Isabelle Scarlett Sch{\"o}nherr},
  title = {{Assemblierung und Analyse des Vitis vinifera Genoms der Rebsorte
	Riesling}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik},
  year = {2011},
  type = {Bachelorarbeit},
  owner = {weise},
  timestamp = {2011.06.20}
}

@ARTICLE{SeiHarRaj11,
  author = {Christiane Seiler and Vokkaliga Thammegowda Harshavardhan and Kalladan
	Rajesh and Palakolanu Sudhakar Reddy and Marc Strickert and Hardy
	Rolletschek and Uwe Scholz and Ulrich Wobus and Nese Sreenivasulu},
  title = {{ABA biosynthesis and degradation contributing to ABA homeostasis
	during barley seed development under control and terminal drought-stress
	conditions}},
  journal = {Journal of Experimental Botany},
  year = {2011},
  volume = {62},
  pages = {2615--2632},
  number = {8},
  doi = {10.1093/jxb/erq446},
  owner = {weise},
  timestamp = {2011.03.18}
}

@MASTERSTHESIS{Sei05,
  author = {Seitz, A.},
  title = {{ Konzept und Entwurf eines Vorgehensmodells zur Entwicklung von
	anwenderspezifischen Datenbankl{\"o}sungen im Bereich Bioinformatik}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2005},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Scholz, Lange}}
}

@MASTERSTHESIS{Sei03,
  author = {Seitz, A.},
  title = {{MARKER-DB~-~ein Informationssystem zur Verwaltung von molekularen
	Markern: Anwendungsentwicklung}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2003},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}}
}

@ARTICLE{SenSteHar07,
  author = {Senning, M., and Steuernagel, B. and Hartmann, A. and Sonnewald,
	U. and Scholz, U. and Sonnewald, S.},
  title = {{Regulation der Keimruhe von Kartoffelknollen}},
  journal = {GenomXPress},
  year = {2007},
  volume = {3},
  pages = {7--10},
  owner = {scholz},
  timestamp = {2007.10.01}
}

@ARTICLE{SilPerSch11,
  author = {Silvar, Cristina and Perovic, Dragan and Scholz, Uwe and Casas, Ana
	M. and Igartua, Ernesto and Ordon, Frank},
  title = {{Fine mapping and comparative genomics integration of two quantitative
	trait loci controlling resistance to powdery mildew in a Spanish
	barley landrace}},
  journal = {Theoretical and Applied Genetics},
  note = {doi: 10.1007/s00122-011-1686-5},
  affiliation = {Department of Genetics and Plant Production, Aula Dei Experimental
	Station, CSIC, Avda Montañana 1005, 50059 Zaragoza, Spain},
  doi = {10.1007/s00122-011-1686-5},
  issn = {0040-5752},
  keyword = {Biomedical and Life Sciences},
  publisher = {Springer Berlin / Heidelberg},
  url = {http://dx.doi.org/10.1007/s00122-011-1686-5}
}

@MASTERSTHESIS{Sof05,
  author = {Soffner, M.},
  title = {{ Konzept und Entwicklung eines Offline-Tools zum Graphmining auf
	integrierten molekularbiologischen Daten}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2005},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Lange}}
}

@MASTERSTHESIS{Sof03,
  author = {Soffner, M.},
  title = {{MARKER-DB~-~ein Informationssystem zur Verwaltung von molekularen
	Markern: Entwicklung der Datenhaltungskomponente}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2003},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}}
}

@MASTERSTHESIS{Spi07,
  author = {Spies, K.},
  title = {{ Integration von Bioinformatikdatenbanken und -anwendungen des IPK
	Gatersleben mittels Web-Services in die internationale Bioinformatik-Infrastruktur}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik },
  year = {2007},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Lange}}
}

@MASTERSTHESIS{Spi06,
  author = {Spies, K.},
  title = {{ Implementierung einer grafischen Nutzeroberfl{\"a}che zur Administration
	und Verwaltung von Datenbankzugriffsrechten f{\"u}r ORACLE Virtual
	Private Database}},
  school = {Martin-Luther-Universit{\"a}t Halle-Wittenberg, Institut f{\"u}r
	Informatik },
  year = {2006},
  type = {Projektarbeit},
  optnote = {{Betreuer: Lange}}
}

@INCOLLECTION{SpiBarKla08,
  author = {Spies, K. and Bargsten, J. and Klapperst{\"u}ck, M. and Lange, M.
	and Scholz, U.},
  title = {{Information Retrieval in Life Science: The BioEscorte Search Engine}},
  booktitle = {{Institutstag IPK Gatersleben, 29th to 30th September 2008, Gatersleben,
	Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{SpiLanBar08,
  author = {Spies, K. and Lange, M. and Bargsten, J. and Klapperst{\"u}ck, M.
	and Schweizer, P. and Scholz, U.},
  title = {{Information Retrieval in Life Science: A Novel Search Engine}},
  booktitle = {{5th International Symposium on Integrative Bioinformatics, 20th
	to 22nd August 2008, Wittenberg, Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@INCOLLECTION{SpiLanBar08a,
  author = {Spies, K. and Lange, M. and Bargsten, J. and Klapperst{\"u}ck, M.
	and Schweizer, P. and Scholz, U.},
  title = {{Information Retrieval in Life Science: A Novel Search Engine}},
  booktitle = {{German Conference on Bioinformatics (GCB2008), 9th to 12th September
	2008, Dresden, Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{SpiLanSch07,
  author = {Spies, K. and Lange, M. and Scholz, U.},
  title = {{Usability Study of Dataintegration with Semantic Web Services}},
  booktitle = {Integrative Bioinformatics, Ghent},
  year = {2007},
  note = {Poster},
  owner = {spies},
  timestamp = {2007.09.19}
}

@ARTICLE{SreUsaWin08,
  author = {Sreenivasulu, N. and Usadel, B. and Winter, A. and Radchuk, V. and
	Scholz, U. and Stein, N. and Weschke, W. and Strickert, M. and Close,
	T.J. and Stitt, M. and Graner, A. and Wobus, U.},
  title = {{Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory
	Network Commonalities and Differences Highlighted by New MapMan/PageMan
	Profiling Tools}},
  journal = {Plant Physiol.},
  year = {2008},
  volume = {146},
  pages = {1738-1758},
  number = {4},
  abstract = {Plant seeds prepare for germination already during seed maturation.
	We performed a detailed transcriptome analysis of barley (Hordeum
	vulgare) grain maturation, desiccation, and germination in two tissue
	fractions (starchy endosperm/aleurone and embryo/scutellum) using
	the Affymetrix Barley1 GeneChip. To aid data evaluation, Arabidopsis
	thaliana MapMan and PageMan tools were adapted to barley. The analyses
	allow a number of conclusions: (1) Cluster analysis revealed a smooth
	transition in transcription programs between late seed maturation
	and germination within embryo tissues, but not in the endosperm/aleurone.
	(2) More than 12,000 transcripts are stored in the embryo of dry
	barley grains, many of which are presumably activated during germination.
	(3) Transcriptional activation of storage reserve mobilization events
	occurs at an early stage of germination, well before radicle protrusion.
	(4) Key genes of gibberellin (GA) biosynthesis are already active
	during grain maturation at a time when abscisic acid peaks suggesting
	the formation of an endogenous store of GA in the aleurone. This
	GA probably acts later during germination in addition to newly synthesized
	GA. (5) Beside the well-known role of GA in gene activation during
	germination spatiotemporal expression data and cis-element searches
	in homologous rice promoters confirm an equally important gene-activating
	role of abscisic acid during this developmental period. The respective
	regulatory webs are linked to auxin and ethylene controlled networks.
	In summary, new bioinformatics PageMan and MapMan tools developed
	in barley have been successfully used to investigate in detail the
	transcriptome relationships between seed maturation and germination
	in an important crop plant.},
  doi = {10.1104/pp.107.111781},
  eprint = {http://www.plantphysiol.org/cgi/reprint/146/4/1738.pdf},
  owner = {scholz},
  timestamp = {2008.04.04},
  url = {http://www.plantphysiol.org/cgi/content/abstract/146/4/1738}
}

@INCOLLECTION{RajKueSch06,
  author = {Sretenovic Rajicic, T. and Kuenne, C. and Scholz, U. and Willner,
	E. and Graner, A. and Dehmer, K. J.},
  title = {{ Analysis of the Lolium plant genetic resources and development
	of molecular passports}},
  booktitle = {{Plant GEMs, Venice, Italy, 11.10.-14.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.27}
}

@ARTICLE{StePraSch07,
  author = {Stein, N. and Prasad, M. and Scholz, U. and Thiel, T. and Zhang H.
	and Wolf, M. and Kota, R. and Varshney, R. K. and Perovic, D. and
	Grosse, I. and Graner, A.},
  title = {{ A 1000 loci transcript map reveals insight into barley genome evolution}},
  journal = {Theoretical and Applied Genetics},
  year = {2007},
  volume = {114},
  pages = {823--839},
  number = {5},
  issn = {0040-5752},
  language = {english},
  owner = {scholz},
  timestamp = {2006.12.01}
}

@INCOLLECTION{StePraSch06a,
  author = {Stein, N. and Prasad, M. and Scholz, U. and Thiel, T. and Zhang H.
	and Wolf, M. and Kota, R. and Varshney, R. K. and Perovic, D. and
	Grosse, I. and Graner, A.},
  title = {{ A 1000 loci transcript map reveals insight into barley genome evolution}},
  booktitle = {{Institutstag, IPK Gatersleben, 10.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.27}
}

@INPROCEEDINGS{SteBacFun06,
  author = {Stephanik, A. and Bachmann, H. and Funke, T. and Kuenne, C. and Langer,
	E. and Thiel, T. and Weise, S. and Grosse, I.},
  title = {{Das Plant Bioinformatics Portal}},
  booktitle = {Ausgew{\"a}hlte Vortr{\"a}ge aus GPZ-Arbeitsgemeinschaften},
  year = {2006},
  volume = {70},
  series = {Vortr{\"a}ge f{\"u}r Pflanzenz{\"u}chtung},
  pages = {81--83},
  address = {G{\"o}ttingen},
  month = {M{\"a}rz},
  publisher = {Gesellschaft f{\"u}r Pflanzenz{\"u}chtung e.\,V.\
	
	 (GPZ)},
  language = {german}
}

@INCOLLECTION{StePetSch08a,
  author = {Steuernagel, B. and Petzold, A. and Schmutzer, T. and Taudien, S.
	and Platzer, M. and Scholz, U. and Stein, N.},
  title = {{Insights into Sequencing Barley -- How to Assemble 454 Reads from
	Barcoded BAC Pools}},
  booktitle = {{German Conference on Bioinformatics (GCB2008), 9th to 12th September
	2008, Dresden, Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{StePetSch08,
  author = {Steuernagel, B. and Petzold, A. and Schmutzer, T. and Taudien, S.
	and Platzer, M. and Stein, N. and Scholz, U.},
  title = {{First Steps for Sequencing Barley -- A Strategy to Assemble 454
	Reads from Barcoded BAC Pools}},
  booktitle = {{Genome Informatics, 10th to 14th September 2008, Hinxton, UK}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{SteSchTau10a,
  author = {Steuernagel, B. and Schmutzer, T. and Taudien, S. and Felder, M.
	and Petzold, A. and Platzer, M. and Ariyadasa, R. and Stein, N. and
	Scholz, U.},
  title = {{Utilizing Next-Generation Sequencing of Barcoded BAC Pools to Analyze
	the Complex Genome of Barley}},
  booktitle = {{Next Generation Sequencing Symposium, MPIZ K{\"o}ln, 3rd to 5th
	November 2010, K{\"o}ln, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.02.03}
}

@INCOLLECTION{SteSchTau10,
  author = {Steuernagel, B. and Schmutzer, T. and Taudien, S. and Platzer, M.
	and Mayer, K.F.X. and Wicker, T. and Scholz, U. and Stein, N.},
  title = {{Evaluation of Assembler on 454 Data of Highly Repetitive Eukariotic
	Sequences}},
  booktitle = {{GABI-Statusseminar, 9th to 11th March 2010, Potsdam, Germany}},
  year = {2010},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.03.16}
}

@INCOLLECTION{SteSchSte08,
  author = {Steuernagel, B. and Scholz, U. and Stein, N.},
  title = {Pipeline for assembling 454 data},
  booktitle = {{Plant Science Student Conference, 4th annual meeting}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@INCOLLECTION{SteSteLan06,
  author = {Steuernagel, B. and Stephanik, A. and Lange, M. and Rutkowski, T.
	and Scholz, U.},
  title = {{Using Data Warehouse Technology for Integrative Analysis of Gene
	Expression Data}},
  booktitle = {Integrative Bioinformatics, 3rd annual meeting, 4th to 6th September
	2006, Rothamsted, UK},
  year = {2006},
  note = {Poster},
  owner = {scholz},
  timestamp = {2006.08.31}
}

@INPROCEEDINGS{SteSteRut06,
  author = {Steuernagel, B. and Stephanik, A. and Rutkowski, T. and Kuenne, C.
	and Weise, S. and Grosse, I. and Scholz, U.},
  title = {{BATEx - A Data Warehouse for Array-based Gene Expression Data of
	Plants}},
  booktitle = {Abstracts of the International Workshop Data Warehouse Technologies
	in Bioinformatics 2006, Wittenberg, December 4-6},
  year = {2006},
  pages = {{17}}
}

@INCOLLECTION{SteSteRut07,
  author = {Steuernagel, B. and Stephanik, A. and Rutkowski, T. and Scholz, U.},
  title = {{BATEx -- Data-Warehouse-based analysis of gene expression data}},
  booktitle = {Institutstag, IPK Gatersleben, 22.-23.10.2007},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@INCOLLECTION{SteTauGun11,
  author = {Burkhard Steuernagel and Stefan Taudien and Heidrun Gundlach and
	Marco Groth and Marius Felder and Thomas Nussbaumer and Matthias
	Platzer and Klaus F. X. Mayer and Uwe Scholz and Nils Stein},
  title = {{WGS Sequencing of Barley: A current status}},
  booktitle = {{GABI-Statusseminar, 15th to 17th March 2011, Potsdam, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.03.30}
}

@ARTICLE{SteTauGun09,
  author = {Steuernagel, Burkhard and Taudien, Stefan and Gundlach, Heidrun and
	Seidel, Michael and Ariyadasa, Ruvini and Schulte, Daniela and Petzold,
	Andreas and Felder, Marius and Graner, Andreas and Scholz, Uwe and
	Mayer, Klaus and Platzer, Matthias and Stein, Nils},
  title = {{De novo 454 sequencing of barcoded BAC pools for comprehensive gene
	survey and genome analysis in the complex genome of barley}},
  journal = {BMC Genomics},
  year = {2009},
  volume = {10},
  pages = {e547},
  number = {1},
  doi = {10.1186/1471-2164-10-547},
  issn = {1471-2164},
  url = {http://www.biomedcentral.com/1471-2164/10/547}
}

@INCOLLECTION{SteWeiFle08,
  author = {Steuernagel, B. and Weise, S. and Flemming, S. and Schmutzer, T.
	and Lange, M. and Scholz, U.},
  title = {{CropHouse -- A Comprehensive Data Warehouse for Crop Plants}},
  booktitle = {{5th International Symposium on Integrative Bioinformatics, 20th
	to 22nd August 2008, Wittenberg, Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@INCOLLECTION{SteWeiSch08,
  author = {Steuernagel, B. and Weise, S. and Schmutzer, T. and Lange, M. and
	Pietsch, C. and Matthies, I. and Schulte, D. and Stein, N. and Scholz,
	U.},
  title = {{CropHouse: Integrative Analysis of Crop Plant Data}},
  booktitle = {{Institutstag IPK Gatersleben, 29th to 30th September 2008, Gatersleben,
	Germany}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.16}
}

@INCOLLECTION{SteWicGun11,
  author = {Steuernagel, Burkhard and Wicker, Thomas and Gundlach, Heidrun and
	Mayer, Klaus F.X. and Stein, Nils and Scholz, Uwe},
  title = {{Assembly Validation and Scaffolding using Transposable Element Information}},
  booktitle = {{Plant and Animal Genome XIX Conference, 15th to 19th January 2011,
	San Diego, USA}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.11.14}
}

@MASTERSTHESIS{Stu09,
  author = {Sturm, J.},
  title = {{Visualisierungsstrategien f{\"u}r bioinformatische Anwendungen}},
  school = {Hochschule Anhalt (FH), K{\"o}then, Fachbereich Informatik},
  year = {2009},
  type = {Diplomarbeit},
  owner = {weise},
  timestamp = {2009.07.27}
}

@MASTERSTHESIS{Sur07,
  author = {Suray, M.},
  title = {{Methoden und Werkzeuge zur automatischen Indexierung und Schemaextraktion
	{\"u}ber Deep-Web-Datenquellen}},
  school = {Universit{\"a}t Bielefeld, Technische Fakult{\"a}t},
  year = {2007},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Lange}}
}

@INCOLLECTION{TauPetSch08,
  author = {S. Taudien and A. Petzold and D. Schulte and U. Scholz and B. Steuernagel
	and N. Stein and M. Platzer},
  title = {{DNA barcoding of BACs allows their efficient multiplex sequencing
	by next generation technology}},
  booktitle = {Evaluierung des Fritz-Lippmann-Instituts Jena},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@ARTICLE{TauSteAri11,
  author = {Taudien, Stefan and Steuernagel, Burkhard and Ariyadasa, Ruvini and
	Schulte, Daniela and Schmutzer, Thomas and Groth, Marco and Felder,
	Marius and Petzold, Andreas and Scholz, Uwe and Mayer, Klaus and
	Stein, Nils and Platzer, Matthias},
  title = {{Sequencing of BAC pools by different next generation sequencing
	platforms and strategies}},
  journal = {BMC Research Notes},
  year = {2011},
  volume = {4},
  pages = {e411},
  number = {1},
  abstract = {BACKGROUND:Next generation sequencing of BACs is a viable option for
	deciphering the sequence of even large and highly repetitive genomes.
	In order to optimize this strategy, we examined the influence of
	read length on the quality of Roche/454 sequence assemblies, to what
	extent Illumina/Solexa mate pairs (MPs) improve the assemblies by
	scaffolding and whether barcoding of BACs is dispensable. RESULTS:Sequencing
	four BACs with both FLX and Titanium technologies revealed similar
	sequencing accuracy, but showed that the longer Titanium reads produce
	considerably less misassemblies and gaps. The 454 assemblies of 96
	barcoded BACs were improved by scaffolding 79% of the total contig
	length with MPs from a non-barcoded library. Assembly of the unmasked
	454 sequences without separation by barcodes revealed chimeric contig
	formation to be a major problem, encompassing 47% of the total contig
	length. Masking the sequences reduced this fraction to 24%. CONCLUSION:Optimal
	BAC pool sequencing should be based on the longest available reads,
	with barcoding essential for a comprehensive assessment of both repetitive
	and non-repetitive sequence information. When interest is restricted
	to non-repetitive regions and repeats are masked prior to assembly,
	barcoding is non-essential. In any case, the assemblies can be improved
	considerably by scaffolding with non-barcoded BAC pool MPs. },
  issn = {1756-0500},
  url = {http://www.biomedcentral.com/content/4/1/411}
}

@INCOLLECTION{TauSteSch09,
  author = {Taudien, S. and Steuernagel, B. and Schulte, D. and Petzold, A. and
	Gundlach, H. and Scholz, U. and Martis, M. and Felder, M. and Simkov{\'a},
	H. and H{\v{r}}ibov{\'a}, E. and Graner, A. and Dolezel, K. and Mayer,
	K. and Platzer, M. and Stein, N.},
  title = {{First steps towards Barley Genome Sequencing by second generation
	sequencing technologies}},
  booktitle = {{GABI-Statusseminar, 3rd to 5th March 2009, Potsdam, Germany}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.07.27}
}

@INCOLLECTION{ThiHolSch10,
  author = {Thiel, J. and Holmann, J. and Schmutzer, T. and Scholz, U. and Weber,
	H. and Weschke, W.},
  title = {The transcriptome of the differentiating barley grain transfer region:
	new sequence information from microdissection-based 454 sequencing},
  booktitle = {{Institutstag IPK Gatersleben, 4th to 6th October 2010, Gatersleben,
	Germany}},
  note = {Poster},
  owner = {weise},
  timestamp = {2010.10.20}
}

@MASTERSTHESIS{Tis06,
  author = {Tischler, T.},
  title = {{ Konzept, Entwurf und Implementierung einer Integrationsl{\"o}sung
	f{\"u}r Anwendungen in der Bioinformatik}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2006},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Kuenne, Stephanik, Scholz}},
  owner = {scholz},
  timestamp = {2006.12.01}
}

@MASTERSTHESIS{Tot07,
  author = {Totz, J.},
  title = {{ Workflow-supported Analysis of Gene Expression Data}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme}},
  year = {2007},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Stephanik}},
  owner = {scholz},
  timestamp = {2007.09.19}
}

@INCOLLECTION{TotLanSte05,
  author = {Totz, J. and Lange, M. and Stein, N. and Scholz, U.},
  title = {{ MoMaVis: User-specific Visualization of Genetic Maps}},
  booktitle = {{8th Gatersleben Research Conference: Genetic Diversity \& Genome
	Dynamics in Plants, Gatersleben/Meisdorf, 03.~-~06.06.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INPROCEEDINGS{VarPraZha04,
  author = {Varshney, R. K. and Prasad, M. and Zhang, H. and Kota, R. and Sigmund,
	R. and Scholz, U. and Stein, N. and Graner, A.},
  title = {{ EST-Derived Markers and Transcript Map of Barley: A Ressource for
	Interspecific transferability and Comparative Mapping in Cereals}},
  booktitle = {{9th International Barley Genetics Symposium, Brno, Czech Republic,
	20-26 June 2004}},
  year = {2004},
  editor = {Spunar, J. and Janikova, J.},
  pages = {332--338}
}

@ARTICLE{VarSigBor05,
  author = {Varshney, R. K. and Sigmund, R. and B{\"o}rner, A. and Korzun, V.
	and Stein, N. and Sorrells, M. E. and Langridge, P. and Graner, A.},
  title = {{ Interspecific transferability and comparative mapping of barley
	EST-SSR markers in wheat, rye and rice}},
  journal = {{Plant Science}},
  year = {2005},
  volume = {168},
  pages = {195--202},
  number = {1}
}

@PHDTHESIS{Wei09,
  author = {Weise, S.},
  title = {{Integrierte Analyse pflanzenbiologischer Daten unter besonderer
	Ber{\"u}cksichtigung der Datenqualit{\"a}t}},
  school = {Universit{\"a}t Bielefeld, Technische Fakult{\"a}t},
  year = {2009},
  type = {Dissertation},
  owner = {weise},
  timestamp = {2010.01.07}
}

@MASTERSTHESIS{Wei02,
  author = {Weise, S.},
  title = {{XML-basierte Mediator-Wrapper-Architektur f{\"u}r die Integration
	von Daten und Methoden}},
  school = {{Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informations\-systeme}},
  year = {2002},
  type = {{Diplomarbeit}},
  optnote = {{Betreuer: Lange}}
}

@INCOLLECTION{WeiBaFu04a,
  author = {Weise, S. and Bachmann, H. and Funke, T. and K{\"u}nne, C. and Langer,
	E. and Stephanik, A. and Thiel, T. and Grosse, I.},
  title = {{ An Electronic Platform for Integrating and Analysing Data for Plant
	Research}},
  booktitle = {ISMB/ECCB~04, July 31 - August 04, 2004, Glasgow, Scotland, UK},
  year = {2004},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{WeiBaFu04b,
  author = {Weise, S. and Bachmann, H. and Funke, T. and K{\"u}nne, C. and Langer,
	E. and Stephanik, A. and Thiel, T. and Grosse, I.},
  title = {{ An Electronic Platform for Integrating and Analysing Data for Plant
	Research}},
  booktitle = {{German Conference on Bioinformatics '04, Bielefeld, 04.~-~06.10.2004}},
  year = {2004},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{WeiBieFle03,
  author = {Weise, S. and Biermann, N. and Flemming, S. and Vorwald, J. and Hintum,
	T.J.L. van and Kn{\"u}pffer, H. and Grosse, I.},
  title = {{ Use of XML for Exchange of Data on Plant Genetic Resources}},
  booktitle = {Taxonomic Databases Working Group, Annual Meeting 2003, 25-26 October
	2003, Lisboa, Portugal},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@ARTICLE{WeiCheJun11,
  author = {Stephan Weise and Jinbo Chen and Bj{\"o}rn Junker and Matthias Klapperst{\"u}ck
	and Matthias Lange and Falk Schreiber and Uwe Scholz},
  title = {{Das Informationssystem MetaCrop zur Unterst{\"u}tzung systembiologischer
	Forschung an Kulturpflanzen}},
  journal = {it -- Information Technology},
  year = {2011},
  volume = {53},
  pages = {234--240},
  number = {5},
  doi = {10.1524/itit.2011.0648},
  language = {german},
  owner = {weise},
  timestamp = {2011.08.16}
}

@INPROCEEDINGS{WeiColGra09a,
  author = {Weise, S. and Colmsee, C. and Grafahrend-Belau, E. and Junker, B.H.
	and Klukas, C. and Lange, M. and Scholz, U. and Schreiber, F.},
  title = {{Datenaustausch und Datenintegration zur Modellierung und Analyse
	metabolischer Netzwerke am Beispiel von Kulturpflanzen}},
  booktitle = {{INFORMATIK 2009 -- Im Focus das Leben, Beitr{\"a}ge der 39. Jahrestagung
	der Gesellschaft f{\"u}r Informatik e.\,V.\ (GI), 28.09. -- 02.10.2009,
	L{\"u}beck}},
  year = {2009},
  editor = {Fischer, S. and Maehle, E. and Reischuk, R.},
  volume = {P-154},
  series = {Lecture Notes in Informatics (LNI)},
  pages = {693--697},
  owner = {weise},
  timestamp = {2009.09.30}
}

@INPROCEEDINGS{WeiColGra09,
  author = {Weise, S. and Colmsee, C. and Grafahrend-Belau, E. and Junker, B.H.
	and Klukas, C. and Lange, M. and Scholz, U. and Schreiber, F.},
  title = {An integration and analysis pipeline for systems biology in crop
	plant metabolism},
  booktitle = {{Data Integration in the Life Sciences; 6th International Workshop,
	DILS 2009, Manchester, UK, 20--22 July 2009}},
  year = {2009},
  editor = {Paton, N.W. and Missier, P. and Hedeler, C.},
  volume = {5647},
  series = {{Lecture Notes in Bioinformatics}},
  pages = {196--203},
  address = {{Berlin et al.: Springer}},
  doi = {10.1007/978-3-642-02879-3_16},
  owner = {weise},
  timestamp = {2009.07.24}
}

@ARTICLE{WeiGroKlu06,
  author = {Weise, S. and Grosse, I. and Klukas, C. and Kosch{\"u}tzki, D. and
	Scholz, U. and Schreiber, F. and Junker, B.H.},
  title = {{Meta-All: a system for managing metabolic pathway information}},
  journal = {BMC Bioinformatics},
  year = {2006},
  volume = {7},
  pages = {e465},
  number = {1},
  month = {October},
  doi = {10.1186/1471-2105-7-465},
  issn = {1471-2105},
  language = {english},
  owner = {scholz},
  timestamp = {2006.10.24},
  url = {http://www.biomedcentral.com/1471-2105/7/465}
}

@ARTICLE{WeiHarKnu07,
  author = {Weise, S. and Harrer, S. and Grosse, I. and Kn{\"u}pffer, H. and
	Willner, E.},
  title = {{The European Poa Database (EPDB)}},
  journal = {FAO-Bioversity Plant Genetic Resources Newsletter},
  year = {2007},
  volume = {150},
  pages = {64--70},
  owner = {scholz},
  timestamp = {2006.08.30}
}

@INPROCEEDINGS{WeiJunKlu07a,
  author = {Weise, S. and Junker, B.H. and Klukas, C. and Kosch{\"u}tzki, D.
	and Grosse, I. and Schreiber, F. and Scholz, U.},
  title = {{ Meta-All: a system for managing metabolic pathway information}},
  booktitle = {Abstracts of the 3rd International Rauischholzhausen Conference:
	Analysis of Compatibility Pathways in Plant-Microbe-Interactions,
	Giessen, Germany, 4-6 March 2007},
  year = {2007},
  pages = {{27}}
}

@INCOLLECTION{WeiJunKlu07b,
  author = {Weise, S. and Junker, B.H. and Klukas, C. and Kosch{\"u}tzki, D.
	and Grosse, I. and Schreiber, F. and Scholz, U.},
  title = {{Meta-All: a system for managing metabolic pathway information}},
  booktitle = {International Workshop Storage and Annotation of Reaction Kinetics
	Data, 21-23 May, Heidelberg, Germany},
  year = {2007},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{WeiJunKlu07c,
  author = {Weise, S. and Junker, B.H. and Klukas, C. and Kosch{\"u}tzki, D.
	and Grosse, I. and Schreiber, F. and Scholz, U.},
  title = {{Meta-All: a system for managing metabolic pathway information}},
  booktitle = {3rd International Rauischholzhausen Conference: Analysis of Compatibility
	Pathways in Plant-Microbe-Interactions, Giessen, Germany, 4-6 March
	2007},
  year = {2007},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.06.10}
}

@INCOLLECTION{WeiKnuVor05,
  author = {Weise, S. and Kn{\"u}pffer, H. and Vorwald, J. and Grosse, I. and
	Scholz, U.},
  title = {{ Integration of Phenotypic Data in the Plant Data Warehouse of the
	Bioinformatics Centre Gatersleben-Halle (BIC-GH)}},
  booktitle = {{GPZ AG5 - Genetische Ressourcen: Erhaltungsstrategien und Management
	Pflanzengenetischer Ressourcen, Gatersleben, 15.~-~16.11.2005}},
  year = {2005},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INPROCEEDINGS{WeiKnuVor06,
  author = {Weise, S. and Kn{\"u}pffer, H. and Vorwald, J. and Scholz, U. and
	Grosse, I.},
  title = {{Integration von ph{\"a}notypischen Daten in das Plant Data Warehouse}},
  booktitle = {Ausgew{\"a}hlte Vortr{\"a}ge aus GPZ-Arbeitsgemeinschaften},
  year = {2006},
  volume = {70},
  series = {Vortr{\"a}ge f{\"u}r Pflanzenz{\"u}chtung},
  pages = {84--86},
  address = {G{\"o}ttingen},
  month = {M{\"a}rz},
  publisher = {Gesellschaft f{\"u}r Pflanzenz{\"u}chtung e.\,V.\
	
	 (GPZ)},
  language = {german}
}

@INCOLLECTION{WeiKnuVor03,
  author = {Weise, S. and Kn{\"u}pffer, H. and Vorwald, J. and Scholz, U. and
	Grosse, I.},
  title = {{ Reorganisation of Characterisation Data and Evaluation Data at
	the IPK Genebank}},
  booktitle = {{German Conference on Bioinformatics '03, Neuherberg/Garching, 12.~-~14.10.2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@INCOLLECTION{WeiMatRod06,
  author = {Weise, S. and Matthies, I. and R{\"o}der, M. and Scholz, U.},
  title = {{ MetaBrew - managing and analysing data about barley malting and
	brewing quality}},
  booktitle = {{Institutstag, IPK Gatersleben, 10.10.2006}},
  year = {2006},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX},
  owner = {scholz},
  timestamp = {2006.09.21}
}

@ARTICLE{WeiSchRoe09,
  author = {Weise, S. and Scholz, U. and R{\"o}der, M. and Matthies, I.},
  title = {{MetaBrew: A comprehensive database of malting quality traits in
	brewing barley.}},
  journal = {Barley Genetics Newsletter},
  year = {2009},
  volume = {39},
  pages = {1--4},
  owner = {weise},
  timestamp = {2009.03.17}
}

@INCOLLECTION{WeiSchRoe08,
  author = {Weise, S. and Scholz, U. and R{\"o}der, M. and Matthies, I.},
  title = {{MetaBrew: a detailed database of malting quality traits in brewing
	barley}},
  booktitle = {{Plant Science Student Conference, 4th annual meeting}},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.08.25}
}

@INCOLLECTION{WeiSchRoe08a,
  author = {Weise, S. and Scholz, U. and R{\"o}der, M. and Matthies, I.},
  title = {{MetaBrew: a detailed database of malting quality traits in brewing
	barley}},
  booktitle = {7th Plant Genomics European Meeting (Plant GEM), 24th to 27th September
	2008, Albena, Bulgaria},
  year = {2008},
  note = {Poster},
  owner = {weise},
  timestamp = {2008.09.17}
}

@INCOLLECTION{WeiKlaFle09,
  author = {Wei{\ss}bach, M. and Klapperst{\"u}ck, M. and Flemming, S. and Lange,
	M. and Scholz, U.},
  title = {{The LAILAPS search engine: A text index infrastructure for relevance
	ranking over life science database entries}},
  booktitle = {{Institutstag IPK Gatersleben, 12th to 14th October 2009, Gatersleben,
	Germany}},
  year = {2009},
  note = {Poster},
  owner = {weise},
  timestamp = {2009.09.23}
}

@ARTICLE{WicMayGun11,
  author = {Wicker, Thomas and Mayer, Klaus F.X. and Gundlach, Heidrun and Martis,
	Mihaela and Steuernagel, Burkhard and Scholz, Uwe and \u{S}imkov{\'a},
	Hana and Kubal{\'a}kov{\'a}, Marie and Choulet, Fr{\'e}d{\'e}ric
	and Taudien, Stefan and Platzer, Matthias and Feuillet, Catherine
	and Fahima, Tzion and Budak, Hikmet and Dole\u{z}el, Jaroslav and
	Keller, Beat and Stein, Nils},
  title = {{Frequent Gene Movement and Pseudogene Evolution Is Common to the
	Large and Complex Genomes of Wheat, Barley, and Their Relatives}},
  journal = {The Plant Cell},
  year = {2011},
  volume = {23},
  pages = {1706--1718},
  number = {5},
  doi = {10.1105/tpc.111.086629},
  owner = {weise},
  timestamp = {2011.05.30},
  url = {http://www.plantcell.org/content/early/2011/05/26/tpc.111.086629.abstract}
}

@MASTERSTHESIS{Wil07,
  author = {Wilhelmi, E.},
  title = {{Reengineering der MOMA~--~Datenbank}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik},
  year = {2007},
  type = {Studienarbeit},
  optnote = {{Betreuer: Scholz}},
  owner = {scholz},
  timestamp = {2007.03.19}
}

@INCOLLECTION{WitWeiFoe11,
  author = {Steffi Witter and Stephan Weise and Jutta F{\"o}rster and Klaus J.
	Dehmer},
  title = {Heterotic pools in perennial ryegrass as basis for biomass hybrid
	breeding},
  booktitle = {{Botanikertagung 2011 -- Diversity Makes The Difference, 18th to
	23rd September 2011, Berlin, Germany}},
  year = {2011},
  note = {Poster},
  owner = {weise},
  timestamp = {2011.09.27}
}

@MASTERSTHESIS{Wit09,
  author = {Wittwer, C.},
  title = {{Herleitung und Extraktion von Schematagraphen aus integrierten Datenbanken
	der Lebenswissenschaften}},
  school = {Otto-von-Guericke-Universit{\"a}t Magdeburg, Fakult{\"a}t f{\"u}r
	Informatik, Institut f{\"u}r Technische und Betriebliche Informationssysteme},
  year = {2009},
  type = {{Studien- und Bachelor-Arbeit}},
  owner = {weise},
  timestamp = {2009.01.29}
}

@MASTERSTHESIS{Xia07,
  author = {Xia, M.},
  title = {{ Hierarchische Datenbankanfrage auf integrierte Datenbanken zur
	Funktionsklassifikation von molekularbiologischen Daten}},
  school = {Universit{\"a}t Bielefeld, Technischen Fakult{\"a}t},
  year = {2007},
  type = {Diplomarbeit},
  optnote = {{Betreuer: Lange}}
}

@INCOLLECTION{ZhaPraKot03,
  author = {Zhang, H. and Prasad, M. and Kota, R. and Varshney, R. K. and Thiel,
	T. and Wolf, M. and Scholz, U. and Stein, N. and Graner, A.},
  title = {{ Barley ESTs: A resource to tap into the rice genome}},
  booktitle = {{Institutstag, IPK Gatersleben, 9. 10. 2003}},
  year = {2003},
  note = {Poster},
  opteditor = {XXX},
  optpages = {000--000},
  optpublisher = {XXX}
}

@ARTICLE{ZhaSreWes04,
  author = {Zhang, H. and Sreenivasulu, N. and Weschke, W. and Stein, N. and
	Rudd, S. and Radchuk, V. and Potokina, E. and Scholz, U. and Schweizer,
	P. and Zierold, U. and Langridge, P. and Varshney, R. K. and Wobus,
	U. and Graner, A.},
  title = {{ Large-scale analysis of the barley transcriptome based on expressed
	sequence tags}},
  journal = {{The Plant Journal}},
  year = {2004},
  volume = {40},
  pages = {276--290},
  number = {2}
}

@ARTICLE{ZieSchSch05,
  author = {Zierold, U. and Scholz, U. and Schweizer, P.},
  title = {{ Transcriptome analysis of mlo-mediated resistance in the epidermis
	of barley}},
  journal = {{Molecular Plant Pathology}},
  year = {2005},
  volume = {6},
  pages = {139--151},
  number = {2}
}

@PROCEEDINGS{LanWeiSch10,
  title = {{Proceedings of the 6th International Symposium on Integrative Bioinformatics
	2010 -- 22nd to 24th March 2010, Churchill College, Cambridge, United
	Kingdom}},
  year = {2010},
  editor = {Matthias Lange and Stephan Weise and Uwe Scholz and Paul Verrier
	and Chris Rawlings},
  owner = {weise},
  timestamp = {2010.03.31},
  url = {http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib2010}
}

